Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.97■□□□□ 0.63
LMX1AQ8TE12 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 AP005212.1-201ENST00000581547 1997 ntBASIC18.97■□□□□ 0.63
LMX1AQ8TE12 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 AC096733.2-201ENST00000609937 1394 ntBASIC18.97■□□□□ 0.63
LMX1AQ8TE12 AL391422.3-201ENST00000603791 2761 ntBASIC18.97■□□□□ 0.63
LMX1AQ8TE12 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 AL691432.2-201ENST00000607222 2038 ntBASIC18.97■□□□□ 0.63
LMX1AQ8TE12 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 CCR12P-201ENST00000446203 998 ntBASIC18.97■□□□□ 0.63
LMX1AQ8TE12 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.96■□□□□ 0.63
LMX1AQ8TE12 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 NTF6B-201ENST00000591913 560 ntBASIC18.95■□□□□ 0.62
LMX1AQ8TE12 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1AQ8TE12 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 HMGA1P5-201ENST00000412453 271 ntBASIC18.94■□□□□ 0.62
LMX1AQ8TE12 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 AC006011.2-201ENST00000621313 1158 ntBASIC18.94■□□□□ 0.62
LMX1AQ8TE12 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.94■□□□□ 0.62
LMX1AQ8TE12 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 SLC25A1P2-201ENST00000430693 912 ntBASIC18.93■□□□□ 0.62
LMX1AQ8TE12 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1AQ8TE12 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms