Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 PRKY-204ENST00000533551 1019 ntBASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC116Q8IYX3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
CCDC116Q8IYX3 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC116Q8IYX3 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CCDC116Q8IYX3 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC116Q8IYX3 Z82202.1-201ENST00000623446 1880 ntBASIC18.33■□□□□ 0.53
CCDC116Q8IYX3 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC116Q8IYX3 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC116Q8IYX3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 AC233263.1-201ENST00000578059 224 ntBASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC116Q8IYX3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 AC069544.1-201ENST00000609399 999 ntBASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC116Q8IYX3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 MTDHP1-201ENST00000605323 784 ntBASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC116Q8IYX3 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 AC120498.9-201ENST00000339021 3867 ntBASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC116Q8IYX3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms