Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NT5C-210ENST00000582160 860 ntTSL 2 BASIC26.07■■□□□ 1.76
USP54Q70EL1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC26.07■■□□□ 1.76
USP54Q70EL1 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP54Q70EL1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP54Q70EL1 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
USP54Q70EL1 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP54Q70EL1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC26.06■■□□□ 1.76
USP54Q70EL1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP54Q70EL1 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP54Q70EL1 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC26.06■■□□□ 1.76
USP54Q70EL1 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
USP54Q70EL1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP54Q70EL1 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
USP54Q70EL1 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
USP54Q70EL1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC26.06■■□□□ 1.76
USP54Q70EL1 AC009947.2-201ENST00000444014 672 ntBASIC26.06■■□□□ 1.76
USP54Q70EL1 FAM86EP-206ENST00000510506 987 ntBASIC26.06■■□□□ 1.76
USP54Q70EL1 CD81-212ENST00000526072 1172 ntTSL 5 BASIC26.06■■□□□ 1.76
USP54Q70EL1 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC26.06■■□□□ 1.76
USP54Q70EL1 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP54Q70EL1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP54Q70EL1 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC26.05■■□□□ 1.76
USP54Q70EL1 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP54Q70EL1 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP54Q70EL1 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC26.05■■□□□ 1.76
USP54Q70EL1 AC091076.1-201ENST00000610741 619 ntBASIC26.05■■□□□ 1.76
USP54Q70EL1 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC26.05■■□□□ 1.76
USP54Q70EL1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP54Q70EL1 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP54Q70EL1 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP54Q70EL1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
USP54Q70EL1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP54Q70EL1 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP54Q70EL1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
USP54Q70EL1 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC26.04■■□□□ 1.76
USP54Q70EL1 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC26.04■■□□□ 1.76
USP54Q70EL1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC26.04■■□□□ 1.76
USP54Q70EL1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USP54Q70EL1 KRT8P45-201ENST00000414328 1447 ntBASIC26.04■■□□□ 1.76
USP54Q70EL1 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
USP54Q70EL1 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC26.03■■□□□ 1.76
USP54Q70EL1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
USP54Q70EL1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC26.03■■□□□ 1.76
USP54Q70EL1 SPDYE15P-201ENST00000424157 909 ntBASIC26.03■■□□□ 1.76
USP54Q70EL1 PHB2-202ENST00000440277 996 ntTSL 5 BASIC26.03■■□□□ 1.76
USP54Q70EL1 AL671277.2-201ENST00000458060 996 ntBASIC26.03■■□□□ 1.76
USP54Q70EL1 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC26.03■■□□□ 1.76
USP54Q70EL1 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
USP54Q70EL1 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC26.03■■□□□ 1.76
USP54Q70EL1 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC26.03■■□□□ 1.76
USP54Q70EL1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
USP54Q70EL1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 TBC1D3P2-202ENST00000577902 1649 ntBASIC26.03■■□□□ 1.76
USP54Q70EL1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC26.03■■□□□ 1.76
USP54Q70EL1 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC26.03■■□□□ 1.76
USP54Q70EL1 CD320-202ENST00000537716 1119 ntTSL 2 BASIC26.03■■□□□ 1.76
USP54Q70EL1 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 ETFA-216ENST00000560726 942 ntTSL 3 BASIC26.03■■□□□ 1.76
USP54Q70EL1 CLN6-204ENST00000564752 900 ntTSL 3 BASIC26.03■■□□□ 1.76
USP54Q70EL1 MIR4674-201ENST00000582457 87 ntBASIC26.03■■□□□ 1.76
USP54Q70EL1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP54Q70EL1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
USP54Q70EL1 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
USP54Q70EL1 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC26.02■■□□□ 1.76
USP54Q70EL1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
USP54Q70EL1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USP54Q70EL1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP54Q70EL1 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC26.02■■□□□ 1.76
USP54Q70EL1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP54Q70EL1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP54Q70EL1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC26.02■■□□□ 1.76
USP54Q70EL1 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP54Q70EL1 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC26.02■■□□□ 1.76
USP54Q70EL1 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC26.02■■□□□ 1.76
USP54Q70EL1 SPDYE13P-201ENST00000445314 798 ntBASIC26.02■■□□□ 1.76
USP54Q70EL1 HOMER2P1-201ENST00000455653 964 ntBASIC26.02■■□□□ 1.76
USP54Q70EL1 AC092647.4-201ENST00000457211 535 ntBASIC26.02■■□□□ 1.76
USP54Q70EL1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC26.02■■□□□ 1.76
USP54Q70EL1 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC26.02■■□□□ 1.76
USP54Q70EL1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC26.02■■□□□ 1.76
USP54Q70EL1 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP54Q70EL1 AC011558.1-201ENST00000623459 338 ntBASIC26.02■■□□□ 1.76
USP54Q70EL1 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP54Q70EL1 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC26.02■■□□□ 1.76
USP54Q70EL1 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP54Q70EL1 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USP54Q70EL1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
USP54Q70EL1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms