Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VCPP55072 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.84■□□□□ 0.93
VCPP55072 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.84■□□□□ 0.93
VCPP55072 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.84■□□□□ 0.93
VCPP55072 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.83■□□□□ 0.93
VCPP55072 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
VCPP55072 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VCPP55072 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VCPP55072 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VCPP55072 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.83■□□□□ 0.93
VCPP55072 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.83■□□□□ 0.93
VCPP55072 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.83■□□□□ 0.93
VCPP55072 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.83■□□□□ 0.92
VCPP55072 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VCPP55072 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
VCPP55072 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.83■□□□□ 0.92
VCPP55072 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.83■□□□□ 0.92
VCPP55072 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VCPP55072 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VCPP55072 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.83■□□□□ 0.92
VCPP55072 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VCPP55072 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 HTR7P1-201ENST00000538670 1336 ntBASIC20.82■□□□□ 0.92
VCPP55072 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.82■□□□□ 0.92
VCPP55072 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.82■□□□□ 0.92
VCPP55072 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
VCPP55072 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
VCPP55072 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VCPP55072 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 WWOX-216ENST00000569818 525 ntBASIC20.82■□□□□ 0.92
VCPP55072 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.82■□□□□ 0.92
VCPP55072 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.82■□□□□ 0.92
VCPP55072 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
VCPP55072 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VCPP55072 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.82■□□□□ 0.92
VCPP55072 BX119927.1-201ENST00000636596 1552 ntBASIC20.81■□□□□ 0.92
VCPP55072 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VCPP55072 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VCPP55072 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VCPP55072 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VCPP55072 MIR1238-201ENST00000408483 83 ntBASIC20.81■□□□□ 0.92
VCPP55072 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.81■□□□□ 0.92
VCPP55072 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
VCPP55072 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.81■□□□□ 0.92
VCPP55072 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.81■□□□□ 0.92
VCPP55072 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VCPP55072 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VCPP55072 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
VCPP55072 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VCPP55072 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.81■□□□□ 0.92
VCPP55072 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.81■□□□□ 0.92
VCPP55072 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.81■□□□□ 0.92
VCPP55072 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.81■□□□□ 0.92
VCPP55072 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.81■□□□□ 0.92
VCPP55072 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
VCPP55072 AC125437.2-201ENST00000625180 2167 ntBASIC20.8■□□□□ 0.92
VCPP55072 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.8■□□□□ 0.92
VCPP55072 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
VCPP55072 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.8■□□□□ 0.92
VCPP55072 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 AL390719.1-204ENST00000412397 1219 ntBASIC20.8■□□□□ 0.92
VCPP55072 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
VCPP55072 UPK3BP1-201ENST00000428678 509 ntBASIC20.8■□□□□ 0.92
VCPP55072 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.8■□□□□ 0.92
VCPP55072 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.8■□□□□ 0.92
VCPP55072 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.8■□□□□ 0.92
VCPP55072 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.8■□□□□ 0.92
VCPP55072 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.8■□□□□ 0.92
VCPP55072 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VCPP55072 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VCPP55072 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VCPP55072 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VCPP55072 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
VCPP55072 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VCPP55072 AL691432.2-201ENST00000607222 2038 ntBASIC20.79■□□□□ 0.92
VCPP55072 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VCPP55072 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms