Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CXCL12P48061 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL12P48061 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.43■□□□□ 0.7
CXCL12P48061 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.43■□□□□ 0.7
CXCL12P48061 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.43■□□□□ 0.7
CXCL12P48061 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL12P48061 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL12P48061 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.43■□□□□ 0.7
CXCL12P48061 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.43■□□□□ 0.7
CXCL12P48061 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.43■□□□□ 0.7
CXCL12P48061 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CXCL12P48061 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL12P48061 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.43■□□□□ 0.7
CXCL12P48061 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
CXCL12P48061 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL12P48061 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL12P48061 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL12P48061 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CXCL12P48061 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.42■□□□□ 0.7
CXCL12P48061 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.42■□□□□ 0.7
CXCL12P48061 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
CXCL12P48061 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
CXCL12P48061 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.42■□□□□ 0.7
CXCL12P48061 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.42■□□□□ 0.7
CXCL12P48061 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.42■□□□□ 0.7
CXCL12P48061 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.42■□□□□ 0.7
CXCL12P48061 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 HYMAI.1-201ENST00000620949 238 ntBASIC19.42■□□□□ 0.7
CXCL12P48061 AL117328.2-201ENST00000624617 1940 ntBASIC19.42■□□□□ 0.7
CXCL12P48061 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.42■□□□□ 0.7
CXCL12P48061 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL12P48061 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CXCL12P48061 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
CXCL12P48061 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.41■□□□□ 0.7
CXCL12P48061 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.41■□□□□ 0.7
CXCL12P48061 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
CXCL12P48061 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 GCSHP2-201ENST00000560971 527 ntBASIC19.41■□□□□ 0.7
CXCL12P48061 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.41■□□□□ 0.7
CXCL12P48061 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.41■□□□□ 0.7
CXCL12P48061 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.41■□□□□ 0.7
CXCL12P48061 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
CXCL12P48061 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.41■□□□□ 0.7
CXCL12P48061 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CXCL12P48061 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.41■□□□□ 0.7
CXCL12P48061 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 LINC01465-201ENST00000408887 1940 ntBASIC19.41■□□□□ 0.7
CXCL12P48061 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.41■□□□□ 0.7
CXCL12P48061 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL12P48061 KRT8P41-201ENST00000533985 1514 ntBASIC19.41■□□□□ 0.7
CXCL12P48061 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.4■□□□□ 0.7
CXCL12P48061 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.4■□□□□ 0.7
CXCL12P48061 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.4■□□□□ 0.7
CXCL12P48061 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.4■□□□□ 0.7
CXCL12P48061 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.4■□□□□ 0.7
CXCL12P48061 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.4■□□□□ 0.7
CXCL12P48061 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.4■□□□□ 0.7
CXCL12P48061 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL12P48061 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
CXCL12P48061 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CXCL12P48061 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
CXCL12P48061 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL12P48061 SMG8-203ENST00000578922 2178 ntBASIC19.39■□□□□ 0.69
CXCL12P48061 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL12P48061 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL12P48061 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL12P48061 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL12P48061 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CXCL12P48061 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.39■□□□□ 0.69
CXCL12P48061 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.39■□□□□ 0.69
CXCL12P48061 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL12P48061 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.39■□□□□ 0.69
CXCL12P48061 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms