Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
HNF4AP41235 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.85■□□□□ 0.61
HNF4AP41235 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.85■□□□□ 0.61
HNF4AP41235 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
HNF4AP41235 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.85■□□□□ 0.61
HNF4AP41235 AC233263.1-201ENST00000578059 224 ntBASIC18.85■□□□□ 0.61
HNF4AP41235 AC006058.3-201ENST00000606217 1069 ntBASIC18.85■□□□□ 0.61
HNF4AP41235 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HNF4AP41235 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.85■□□□□ 0.61
HNF4AP41235 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HNF4AP41235 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
HNF4AP41235 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
HNF4AP41235 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 AP006587.1-201ENST00000534129 1502 ntBASIC18.84■□□□□ 0.61
HNF4AP41235 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HNF4AP41235 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HNF4AP41235 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HNF4AP41235 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.84■□□□□ 0.61
HNF4AP41235 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HNF4AP41235 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HNF4AP41235 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HNF4AP41235 KRT17P3-201ENST00000420566 1262 ntBASIC18.84■□□□□ 0.61
HNF4AP41235 YBX1P10-201ENST00000444752 975 ntBASIC18.84■□□□□ 0.61
HNF4AP41235 FAM201B-201ENST00000458407 597 ntBASIC18.84■□□□□ 0.61
HNF4AP41235 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.84■□□□□ 0.61
HNF4AP41235 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.84■□□□□ 0.61
HNF4AP41235 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HNF4AP41235 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HNF4AP41235 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.84■□□□□ 0.61
HNF4AP41235 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
HNF4AP41235 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HNF4AP41235 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.83■□□□□ 0.61
HNF4AP41235 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HNF4AP41235 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HNF4AP41235 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.83■□□□□ 0.61
HNF4AP41235 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HNF4AP41235 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
HNF4AP41235 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HNF4AP41235 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HNF4AP41235 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HNF4AP41235 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.83■□□□□ 0.6
HNF4AP41235 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HNF4AP41235 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
HNF4AP41235 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HNF4AP41235 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.83■□□□□ 0.6
HNF4AP41235 POU5F1P3-201ENST00000428824 1078 ntBASIC18.83■□□□□ 0.6
HNF4AP41235 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.83■□□□□ 0.6
HNF4AP41235 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.83■□□□□ 0.6
HNF4AP41235 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.83■□□□□ 0.6
HNF4AP41235 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.83■□□□□ 0.6
HNF4AP41235 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.83■□□□□ 0.6
HNF4AP41235 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
HNF4AP41235 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HNF4AP41235 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.83■□□□□ 0.6
HNF4AP41235 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HNF4AP41235 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HNF4AP41235 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HNF4AP41235 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HNF4AP41235 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HNF4AP41235 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HNF4AP41235 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HNF4AP41235 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HNF4AP41235 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
HNF4AP41235 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.82■□□□□ 0.6
HNF4AP41235 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.82■□□□□ 0.6
HNF4AP41235 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.82■□□□□ 0.6
HNF4AP41235 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.82■□□□□ 0.6
HNF4AP41235 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.82■□□□□ 0.6
HNF4AP41235 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms