Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.5■□□□□ 0.55
RORAP35398 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.5■□□□□ 0.55
RORAP35398 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.5■□□□□ 0.55
RORAP35398 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.5■□□□□ 0.55
RORAP35398 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.5■□□□□ 0.55
RORAP35398 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.5■□□□□ 0.55
RORAP35398 FSCN1P1-201ENST00000568912 1481 ntBASIC18.5■□□□□ 0.55
RORAP35398 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RORAP35398 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.5■□□□□ 0.55
RORAP35398 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.49■□□□□ 0.55
RORAP35398 TMEM179-206ENST00000616017 1645 ntBASIC18.49■□□□□ 0.55
RORAP35398 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 AC099778.1-201ENST00000568593 1911 ntBASIC18.49■□□□□ 0.55
RORAP35398 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.49■□□□□ 0.55
RORAP35398 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
RORAP35398 RCN1P1-201ENST00000400413 996 ntBASIC18.49■□□□□ 0.55
RORAP35398 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 KRT18P21-201ENST00000515767 1272 ntBASIC18.49■□□□□ 0.55
RORAP35398 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.49■□□□□ 0.55
RORAP35398 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.49■□□□□ 0.55
RORAP35398 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.49■□□□□ 0.55
RORAP35398 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.49■□□□□ 0.55
RORAP35398 AC145285.6-201ENST00000604632 637 ntBASIC18.49■□□□□ 0.55
RORAP35398 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.49■□□□□ 0.55
RORAP35398 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.49■□□□□ 0.55
RORAP35398 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
RORAP35398 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
RORAP35398 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.49■□□□□ 0.55
RORAP35398 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RORAP35398 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.49■□□□□ 0.55
RORAP35398 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RORAP35398 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.48■□□□□ 0.55
RORAP35398 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RORAP35398 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.48■□□□□ 0.55
RORAP35398 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RORAP35398 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RORAP35398 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.48■□□□□ 0.55
RORAP35398 AL390955.1-201ENST00000428694 934 ntBASIC18.48■□□□□ 0.55
RORAP35398 B3GAT3P1-201ENST00000471720 806 ntBASIC18.48■□□□□ 0.55
RORAP35398 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.48■□□□□ 0.55
RORAP35398 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.48■□□□□ 0.55
RORAP35398 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
RORAP35398 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.48■□□□□ 0.55
RORAP35398 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.48■□□□□ 0.55
RORAP35398 MIR6786-201ENST00000616843 113 ntBASIC18.48■□□□□ 0.55
RORAP35398 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.48■□□□□ 0.55
RORAP35398 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
RORAP35398 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RORAP35398 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RORAP35398 AC073130.3-201ENST00000624389 2278 ntBASIC18.48■□□□□ 0.55
RORAP35398 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RORAP35398 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RORAP35398 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RORAP35398 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RORAP35398 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
RORAP35398 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.48■□□□□ 0.55
RORAP35398 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 AL391422.3-201ENST00000603791 2761 ntBASIC18.47■□□□□ 0.55
RORAP35398 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
RORAP35398 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.47■□□□□ 0.55
RORAP35398 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
RORAP35398 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
RORAP35398 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.47■□□□□ 0.55
RORAP35398 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.47■□□□□ 0.55
RORAP35398 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RORAP35398 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.47■□□□□ 0.55
RORAP35398 AC131212.4-201ENST00000623606 975 ntBASIC18.47■□□□□ 0.55
RORAP35398 HLA-A-209ENST00000638375 975 ntBASIC18.47■□□□□ 0.55
RORAP35398 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
RORAP35398 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms