Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC30.97■■■□□ 2.55
CLIP1P30622 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC30.97■■■□□ 2.55
CLIP1P30622 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC30.97■■■□□ 2.55
CLIP1P30622 MED17-221ENST00000639724 2317 ntTSL 5 BASIC30.97■■■□□ 2.55
CLIP1P30622 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CLIP1P30622 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC30.96■■■□□ 2.55
CLIP1P30622 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC30.96■■■□□ 2.55
CLIP1P30622 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CLIP1P30622 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
CLIP1P30622 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC30.96■■■□□ 2.55
CLIP1P30622 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CLIP1P30622 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC30.96■■■□□ 2.55
CLIP1P30622 FAM207BP-201ENST00000447172 505 ntBASIC30.96■■■□□ 2.55
CLIP1P30622 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC30.96■■■□□ 2.55
CLIP1P30622 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC30.96■■■□□ 2.55
CLIP1P30622 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC30.96■■■□□ 2.55
CLIP1P30622 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CLIP1P30622 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC30.95■■■□□ 2.55
CLIP1P30622 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
CLIP1P30622 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
CLIP1P30622 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC30.95■■■□□ 2.55
CLIP1P30622 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CLIP1P30622 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
CLIP1P30622 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
CLIP1P30622 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
CLIP1P30622 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC30.95■■■□□ 2.55
CLIP1P30622 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CLIP1P30622 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC30.95■■■□□ 2.54
CLIP1P30622 AC097488.1-201ENST00000507834 756 ntBASIC30.95■■■□□ 2.54
CLIP1P30622 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC30.95■■■□□ 2.54
CLIP1P30622 NAPSB-206ENST00000562112 1266 ntBASIC30.95■■■□□ 2.54
CLIP1P30622 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CLIP1P30622 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
CLIP1P30622 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CLIP1P30622 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC30.95■■■□□ 2.54
CLIP1P30622 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CLIP1P30622 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CLIP1P30622 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC30.95■■■□□ 2.54
CLIP1P30622 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC30.94■■■□□ 2.54
CLIP1P30622 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC30.94■■■□□ 2.54
CLIP1P30622 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC30.94■■■□□ 2.54
CLIP1P30622 AC005521.1-201ENST00000393351 872 ntBASIC30.94■■■□□ 2.54
CLIP1P30622 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC30.94■■■□□ 2.54
CLIP1P30622 DUT-205ENST00000558813 769 ntTSL 2 BASIC30.94■■■□□ 2.54
CLIP1P30622 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CLIP1P30622 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
CLIP1P30622 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CLIP1P30622 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CLIP1P30622 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC30.94■■■□□ 2.54
CLIP1P30622 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CLIP1P30622 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CLIP1P30622 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC30.93■■■□□ 2.54
CLIP1P30622 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC30.93■■■□□ 2.54
CLIP1P30622 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
CLIP1P30622 ANKRD18DP-204ENST00000455355 1975 ntBASIC30.93■■■□□ 2.54
CLIP1P30622 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC30.93■■■□□ 2.54
CLIP1P30622 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
CLIP1P30622 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CLIP1P30622 LINC01568-207ENST00000641790 1380 ntBASIC30.93■■■□□ 2.54
CLIP1P30622 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC30.93■■■□□ 2.54
CLIP1P30622 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CLIP1P30622 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CLIP1P30622 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CLIP1P30622 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
CLIP1P30622 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
CLIP1P30622 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC30.92■■■□□ 2.54
CLIP1P30622 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CLIP1P30622 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC30.92■■■□□ 2.54
CLIP1P30622 DERL1-203ENST00000419562 918 ntTSL 2 BASIC30.92■■■□□ 2.54
CLIP1P30622 MFAP1P1-201ENST00000442257 1255 ntBASIC30.92■■■□□ 2.54
CLIP1P30622 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC30.92■■■□□ 2.54
CLIP1P30622 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC30.92■■■□□ 2.54
CLIP1P30622 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC30.92■■■□□ 2.54
CLIP1P30622 AL049597.2-201ENST00000565575 961 ntBASIC30.92■■■□□ 2.54
CLIP1P30622 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CLIP1P30622 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CLIP1P30622 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC30.92■■■□□ 2.54
CLIP1P30622 AC125437.2-201ENST00000625180 2167 ntBASIC30.92■■■□□ 2.54
CLIP1P30622 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
CLIP1P30622 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
CLIP1P30622 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC30.91■■■□□ 2.54
CLIP1P30622 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CLIP1P30622 AC104417.2-201ENST00000562989 1793 ntBASIC30.91■■■□□ 2.54
CLIP1P30622 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
CLIP1P30622 TERF1P1-201ENST00000311003 1181 ntBASIC30.91■■■□□ 2.54
CLIP1P30622 CRAT-202ENST00000393384 973 ntTSL 2 BASIC30.91■■■□□ 2.54
CLIP1P30622 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC30.91■■■□□ 2.54
CLIP1P30622 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC30.91■■■□□ 2.54
CLIP1P30622 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CLIP1P30622 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC30.91■■■□□ 2.54
CLIP1P30622 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC30.91■■■□□ 2.54
CLIP1P30622 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLIP1P30622 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC30.9■■■□□ 2.54
CLIP1P30622 CRYGFP-201ENST00000418459 633 ntBASIC30.9■■■□□ 2.54
CLIP1P30622 KRT18P57-201ENST00000443599 1254 ntBASIC30.9■■■□□ 2.54
CLIP1P30622 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC30.9■■■□□ 2.54
CLIP1P30622 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC30.9■■■□□ 2.54
CLIP1P30622 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
CLIP1P30622 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC30.9■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms