Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL5A3P25940 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL5A3P25940 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC24.66■■□□□ 1.54
COL5A3P25940 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
COL5A3P25940 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
COL5A3P25940 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
COL5A3P25940 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
COL5A3P25940 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL5A3P25940 TBC1D3P2-202ENST00000577902 1649 ntBASIC24.66■■□□□ 1.54
COL5A3P25940 HBZP1-201ENST00000354915 429 ntBASIC24.66■■□□□ 1.54
COL5A3P25940 ATP5G2P1-201ENST00000433580 426 ntBASIC24.66■■□□□ 1.54
COL5A3P25940 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
COL5A3P25940 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL5A3P25940 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
COL5A3P25940 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL5A3P25940 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC24.65■■□□□ 1.54
COL5A3P25940 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL5A3P25940 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
COL5A3P25940 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC24.65■■□□□ 1.54
COL5A3P25940 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
COL5A3P25940 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
COL5A3P25940 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
COL5A3P25940 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
COL5A3P25940 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
COL5A3P25940 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
COL5A3P25940 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC24.64■■□□□ 1.54
COL5A3P25940 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.54
COL5A3P25940 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC24.64■■□□□ 1.54
COL5A3P25940 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
COL5A3P25940 AL031432.5-201ENST00000641059 760 ntBASIC24.64■■□□□ 1.54
COL5A3P25940 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC24.64■■□□□ 1.54
COL5A3P25940 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
COL5A3P25940 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC24.64■■□□□ 1.54
COL5A3P25940 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC24.64■■□□□ 1.54
COL5A3P25940 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC24.64■■□□□ 1.54
COL5A3P25940 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
COL5A3P25940 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC24.64■■□□□ 1.53
COL5A3P25940 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC24.64■■□□□ 1.53
COL5A3P25940 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC24.64■■□□□ 1.53
COL5A3P25940 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
COL5A3P25940 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
COL5A3P25940 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC24.64■■□□□ 1.53
COL5A3P25940 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
COL5A3P25940 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
COL5A3P25940 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC24.64■■□□□ 1.53
COL5A3P25940 PP7080-204ENST00000510714 601 ntTSL 3 BASIC24.64■■□□□ 1.53
COL5A3P25940 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
COL5A3P25940 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC24.63■■□□□ 1.53
COL5A3P25940 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC24.63■■□□□ 1.53
COL5A3P25940 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL5A3P25940 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC24.63■■□□□ 1.53
COL5A3P25940 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL5A3P25940 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
COL5A3P25940 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC24.63■■□□□ 1.53
COL5A3P25940 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC24.63■■□□□ 1.53
COL5A3P25940 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC24.63■■□□□ 1.53
COL5A3P25940 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL5A3P25940 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
COL5A3P25940 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC24.63■■□□□ 1.53
COL5A3P25940 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC24.63■■□□□ 1.53
COL5A3P25940 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL5A3P25940 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
COL5A3P25940 AC133561.1-201ENST00000568600 2415 ntBASIC24.63■■□□□ 1.53
COL5A3P25940 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC24.63■■□□□ 1.53
COL5A3P25940 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
COL5A3P25940 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.62■■□□□ 1.53
COL5A3P25940 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC24.62■■□□□ 1.53
COL5A3P25940 GCSHP2-201ENST00000560971 527 ntBASIC24.62■■□□□ 1.53
COL5A3P25940 MIR4674-201ENST00000582457 87 ntBASIC24.62■■□□□ 1.53
COL5A3P25940 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.62■■□□□ 1.53
COL5A3P25940 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
COL5A3P25940 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
COL5A3P25940 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
COL5A3P25940 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL5A3P25940 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL5A3P25940 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC24.61■■□□□ 1.53
COL5A3P25940 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.61■■□□□ 1.53
COL5A3P25940 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC24.61■■□□□ 1.53
COL5A3P25940 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
COL5A3P25940 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
COL5A3P25940 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
COL5A3P25940 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
COL5A3P25940 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
COL5A3P25940 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
COL5A3P25940 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC24.61■■□□□ 1.53
COL5A3P25940 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC24.61■■□□□ 1.53
COL5A3P25940 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
COL5A3P25940 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC24.61■■□□□ 1.53
COL5A3P25940 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
COL5A3P25940 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC24.6■■□□□ 1.53
COL5A3P25940 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms