Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
COL5A1P20908 AP000523.1-201ENST00000398242 1049 ntBASIC18.74■□□□□ 0.59
COL5A1P20908 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.74■□□□□ 0.59
COL5A1P20908 CKBP1-201ENST00000565489 1086 ntBASIC18.74■□□□□ 0.59
COL5A1P20908 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
COL5A1P20908 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A1P20908 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.73■□□□□ 0.59
COL5A1P20908 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL5A1P20908 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.73■□□□□ 0.59
COL5A1P20908 TPM4P1-201ENST00000436100 807 ntBASIC18.73■□□□□ 0.59
COL5A1P20908 KRT18P38-201ENST00000449496 1282 ntBASIC18.73■□□□□ 0.59
COL5A1P20908 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.73■□□□□ 0.59
COL5A1P20908 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.73■□□□□ 0.59
COL5A1P20908 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.73■□□□□ 0.59
COL5A1P20908 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL5A1P20908 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.73■□□□□ 0.59
COL5A1P20908 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.73■□□□□ 0.59
COL5A1P20908 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.73■□□□□ 0.59
COL5A1P20908 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A1P20908 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL5A1P20908 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.72■□□□□ 0.59
COL5A1P20908 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.72■□□□□ 0.59
COL5A1P20908 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.72■□□□□ 0.59
COL5A1P20908 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A1P20908 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A1P20908 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.72■□□□□ 0.59
COL5A1P20908 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.72■□□□□ 0.59
COL5A1P20908 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A1P20908 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL5A1P20908 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL5A1P20908 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL5A1P20908 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A1P20908 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.72■□□□□ 0.59
COL5A1P20908 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 STARP1-201ENST00000397973 869 ntBASIC18.72■□□□□ 0.59
COL5A1P20908 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A1P20908 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.72■□□□□ 0.59
COL5A1P20908 ZNF444P1-201ENST00000559497 298 ntBASIC18.72■□□□□ 0.59
COL5A1P20908 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
COL5A1P20908 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL5A1P20908 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A1P20908 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.71■□□□□ 0.59
COL5A1P20908 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL5A1P20908 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.71■□□□□ 0.59
COL5A1P20908 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL5A1P20908 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A1P20908 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A1P20908 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.71■□□□□ 0.59
COL5A1P20908 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.71■□□□□ 0.59
COL5A1P20908 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A1P20908 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.71■□□□□ 0.59
COL5A1P20908 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.71■□□□□ 0.59
COL5A1P20908 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.71■□□□□ 0.59
COL5A1P20908 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
COL5A1P20908 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A1P20908 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.71■□□□□ 0.59
COL5A1P20908 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL5A1P20908 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
COL5A1P20908 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.7■□□□□ 0.58
COL5A1P20908 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL5A1P20908 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.7■□□□□ 0.58
COL5A1P20908 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
COL5A1P20908 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
COL5A1P20908 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL5A1P20908 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.7■□□□□ 0.58
COL5A1P20908 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
COL5A1P20908 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 158.9 ms