Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL354798.1-201ENST00000622505 329 ntBASIC4.23□□□□□ -1.73
VPS13AQ96RL7 FP236240.3-201ENST00000623061 327 ntBASIC4.23□□□□□ -1.73
VPS13AQ96RL7 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AL512326.1-201ENST00000443050 721 ntBASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AC104306.1-201ENST00000449702 371 ntBASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AC015912.2-201ENST00000571053 181 ntBASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AC010680.3-201ENST00000604215 520 ntBASIC4.23□□□□□ -1.73
VPS13AQ96RL7 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AC068733.2-201ENST00000605434 1418 ntBASIC4.23□□□□□ -1.73
VPS13AQ96RL7 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 RPL21P67-201ENST00000402896 478 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AC098799.1-201ENST00000504752 800 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 SCARNA14-201ENST00000516903 136 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AC107068.1-201ENST00000563286 4218 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 Y_RNA.510-201ENST00000384511 114 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 MIR30B-201ENST00000384850 88 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 UBE2V1P3-201ENST00000439651 417 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 MIR7853-201ENST00000584820 132 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AC115621.1-201ENST00000604653 858 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 PTCD3-201ENST00000254630 6734 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 OR4K6P-201ENST00000416478 897 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 RPL21P43-201ENST00000425440 472 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 RPS20P4-201ENST00000461659 355 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AK4P6-201ENST00000505168 528 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 NPM1P21-201ENST00000513394 762 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 FKBP1BP1-201ENST00000553366 325 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 AC120057.2-201ENST00000571520 271 ntBASIC4.22□□□□□ -1.73
VPS13AQ96RL7 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS13AQ96RL7 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.73
VPS13AQ96RL7 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
VPS13AQ96RL7 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.21□□□□□ -1.73
VPS13AQ96RL7 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.73
VPS13AQ96RL7 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
VPS13AQ96RL7 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AC008549.2-201ENST00000333482 706 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 RNA5SP151-201ENST00000365632 117 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 RPL7P4-203ENST00000430239 730 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 RPL6P9-201ENST00000466502 859 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 RPL7P9-201ENST00000468715 747 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 IGKV2D-19-201ENST00000523346 262 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AL606490.9-201ENST00000603331 271 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 LRRC37A9P-201ENST00000603850 5376 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 HNRNPA1P54-201ENST00000411857 9714 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 CASC19-261ENST00000641853 1638 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 SNORA48.2-201ENST00000390926 124 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AC108032.1-201ENST00000416706 207 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AC104164.2-201ENST00000496953 495 ntBASIC4.21□□□□□ -1.74
VPS13AQ96RL7 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS13AQ96RL7 AC016957.2-201ENST00000616998 848 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms