Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 BTF3P13-201ENST00000513224 490 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 RNA5SP43-201ENST00000516559 110 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXD4P09016 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 DYNLL1P4-201ENST00000549314 266 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXD4P09016 SNORD39.2-201ENST00000579995 76 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXD4P09016 FAM60CP-201ENST00000591086 664 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.52□□□□□ -1.69
HOXD4P09016 MEMO1P5-201ENST00000604810 406 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 AC144521.1-201ENST00000607148 956 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 AP000346.3-201ENST00000622821 210 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXD4P09016 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXD4P09016 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.52□□□□□ -1.69
HOXD4P09016 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXD4P09016 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 AC112198.2-201ENST00000426589 6996 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXD4P09016 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 RNU6-398P-201ENST00000384143 109 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HOXD4P09016 RNU6-1320P-201ENST00000390838 107 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 RNU6-1269P-201ENST00000391139 107 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 RPS16P5-201ENST00000406501 404 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXD4P09016 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 PCNPP4-201ENST00000414817 517 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 RCC2P2-201ENST00000422174 918 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AJ239321.1-201ENST00000424255 564 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXD4P09016 RPL17P35-201ENST00000432217 549 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXD4P09016 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXD4P09016 AL606490.8-201ENST00000441624 319 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 HMGB3P9-201ENST00000441799 583 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXD4P09016 RNU6-599P-201ENST00000459383 107 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 RNU6-1193P-201ENST00000459461 107 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXD4P09016 NDUFA5P9-201ENST00000472609 340 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXD4P09016 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXD4P09016 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXD4P09016 OR7H2P-201ENST00000513483 306 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXD4P09016 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXD4P09016 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.51□□□□□ -1.69
HOXD4P09016 AC019227.1-201ENST00000526902 510 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HOXD4P09016 UBE2FP2-201ENST00000566646 462 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXD4P09016 RNF138P2-201ENST00000603490 592 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AC008745.1-201ENST00000604064 271 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 MIR6780A-201ENST00000615089 68 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 MIR8069-1-201ENST00000616627 86 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 AL158196.1-201ENST00000616786 434 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 RNU6-368P-201ENST00000620928 107 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 MIR8069-2-201ENST00000621412 86 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 RNU6-538P-201ENST00000622329 107 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXD4P09016 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
HOXD4P09016 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.51□□□□□ -1.69
HOXD4P09016 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 OR10AB1P-202ENST00000641219 1686 ntBASIC4.51□□□□□ -1.69
HOXD4P09016 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXD4P09016 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXD4P09016 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 NEAT1-202ENST00000501122 22743 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
HOXD4P09016 RLIMP2-201ENST00000427891 1563 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HOXD4P09016 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXD4P09016 SNORA2.3-201ENST00000383920 135 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 RNU6-152P-201ENST00000384037 107 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 RNU6-1263P-201ENST00000384601 106 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXD4P09016 AL121834.1-202ENST00000404494 277 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AL589655.1-201ENST00000405398 482 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AL390316.1-201ENST00000406279 553 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 GLS-203ENST00000409215 632 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXD4P09016 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXD4P09016 AL512504.1-201ENST00000415494 778 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 COX6CP17-201ENST00000421389 185 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AL392003.1-201ENST00000434394 243 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 RHOT1P3-201ENST00000436571 331 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 RPL34P20-201ENST00000442771 351 ntBASIC4.5□□□□□ -1.69
HOXD4P09016 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms