Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 CU459211.1-201ENST00000635667 749 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC139713.2-210ENST00000641741 992 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS4AQ9UN37 AC099786.3-201ENST00000565735 1410 ntBASIC5.31□□□□□ -1.56
VPS4AQ9UN37 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RN7SKP103-201ENST00000363848 320 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 MIR513B-201ENST00000385136 84 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 MIR550A3-201ENST00000390735 95 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RPL23AP59-201ENST00000399415 461 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AL645733.1-201ENST00000402250 217 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RPS27AP11-201ENST00000402798 447 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RPL23AP4-201ENST00000427757 463 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RPL7P34-201ENST00000433316 712 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AL390119.1-201ENST00000440329 312 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC073465.2-201ENST00000440938 498 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC097499.1-201ENST00000444277 208 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AL050341.1-201ENST00000447743 313 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 OFD1P7Y-201ENST00000454643 1155 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 NAP1L1P3-201ENST00000462291 880 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RN7SL51P-201ENST00000468230 285 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RPS17P15-201ENST00000475609 349 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RN7SL583P-201ENST00000475692 287 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RPS4XP6-201ENST00000477670 797 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RPSAP51-201ENST00000497462 645 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 MTHFD2P4-201ENST00000515074 1025 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RNA5SP303-201ENST00000516192 130 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 RNA5SP230-201ENST00000517039 122 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 MRPS36P3-201ENST00000519284 130 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 NDUFS5P6-201ENST00000529136 295 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 MRPS36P5-201ENST00000551909 298 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AL049779.2-201ENST00000553847 315 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AL162574.1-201ENST00000615702 950 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC021755.4-201ENST00000616620 456 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC090510.2-201ENST00000617465 629 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC123767.1-202ENST00000620407 817 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC068870.2-201ENST00000620635 389 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC022079.1-201ENST00000621546 602 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AC099654.6-201ENST00000636487 512 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 SAMMSON-209ENST00000641222 1100 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS4AQ9UN37 AL121950.1-201ENST00000624993 2077 ntBASIC5.3□□□□□ -1.56
VPS4AQ9UN37 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 AC131971.1-201ENST00000332881 1482 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS4AQ9UN37 METTL21EP-201ENST00000298105 713 ntBASIC5.29□□□□□ -1.56
VPS4AQ9UN37 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms