Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC123769.2-201ENST00000624332 5984 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AL031119.1-201ENST00000404707 1879 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC023762.1-201ENST00000603280 584 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 LINC01808-202ENST00000641680 1116 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC007159.1-201ENST00000566529 4706 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 CASC19-204ENST00000641001 2055 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 AL139095.1-201ENST00000404326 391 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 AP000357.1-201ENST00000409926 1165 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 RN7SKP284-201ENST00000411002 343 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 RAB9AP3-201ENST00000412737 573 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 MTND4LP17-201ENST00000414607 293 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 RAB9AP1-201ENST00000449393 573 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 AC098799.3-201ENST00000506095 438 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 HMGN1P15-201ENST00000513870 295 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 AP005435.3-201ENST00000531260 3198 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 RPEP2-201ENST00000432149 701 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 PARP4P3-201ENST00000510265 317 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 HSPE1P5-201ENST00000561489 272 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 AC010608.2-201ENST00000624830 470 ntBASIC4.25□□□□□ -1.73
VPS13AQ96RL7 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS13AQ96RL7 OR8F1P-201ENST00000425243 930 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 ACTR3P3-201ENST00000480448 893 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 SNX18P3-202ENST00000565670 1750 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 RNA5SP22-201ENST00000365393 109 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 RN7SKP156-201ENST00000410308 342 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 HSPE1P12-201ENST00000412576 301 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AC115115.1-201ENST00000449927 248 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AC113403.1-201ENST00000604910 193 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AC008013.2-202ENST00000637965 364 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AP000756.2-201ENST00000624168 2567 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 ADAM5-202ENST00000399789 1942 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AC099670.2-201ENST00000435130 321 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 RPL7P28-201ENST00000437739 740 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AL049873.1-201ENST00000480540 376 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 AL034408.1-202ENST00000636088 415 ntBASIC4.24□□□□□ -1.73
VPS13AQ96RL7 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
VPS13AQ96RL7 UBBP2-201ENST00000376781 231 ntBASIC4.23□□□□□ -1.73
VPS13AQ96RL7 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.23□□□□□ -1.73
VPS13AQ96RL7 AC140113.4-201ENST00000622087 222 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms