Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RN7SKP100-201ENST00000411258 284 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 TMBIM7P-201ENST00000418074 855 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AL451139.1-201ENST00000434718 346 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AP000936.3-201ENST00000438127 255 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 HMGB3P9-201ENST00000441799 583 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 TXNP2-201ENST00000443918 295 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AC091685.2-201ENST00000454924 864 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AC063943.1-201ENST00000465434 453 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 RNU6-709P-201ENST00000517257 104 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AF186190.1-201ENST00000517470 480 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 RN7SL802P-201ENST00000577858 299 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 RN7SL52P-201ENST00000584271 284 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AC022726.1-201ENST00000587475 207 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AL512782.1-201ENST00000603093 364 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AL391358.1-201ENST00000605342 190 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 FAM25E-202ENST00000608562 189 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 LINC00901.1-201ENST00000617252 152 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 AL121890.2-201ENST00000617644 465 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AC093775.1-201ENST00000624154 1868 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS35Q96QK1 AC110792.3-201ENST00000595906 1614 ntBASIC4.79□□□□□ -1.64
VPS35Q96QK1 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS35Q96QK1 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS35Q96QK1 AC132825.1-201ENST00000463573 2247 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS35Q96QK1 ZFRP1-201ENST00000457579 2970 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 ST13P16-201ENST00000401760 781 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 VN1R37P-201ENST00000419096 748 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 OR5M12P-201ENST00000423388 929 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 RPL23AP4-201ENST00000427757 463 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 RPS17P8-201ENST00000434525 335 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 ARL5AP3-201ENST00000439327 386 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 OR1H1P-201ENST00000448731 937 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 AC104971.1-201ENST00000495117 578 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 SCARNA22-201ENST00000503991 125 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 AC113430.1-201ENST00000506872 718 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 UBE2FP2-201ENST00000566646 462 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 MIR5699-201ENST00000578903 90 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 HMGB1P51-201ENST00000605166 638 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 TLK1P1-201ENST00000456760 2440 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 UGT2B26P-201ENST00000508672 1613 ntBASIC4.78□□□□□ -1.64
VPS35Q96QK1 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
VPS35Q96QK1 AL121950.1-201ENST00000624993 2077 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 MT-TP-201ENST00000387461 68 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AL645608.4-201ENST00000423619 154 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC022022.1-201ENST00000430304 178 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 198.3 ms