Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 MTCYBP31-201ENST00000438855 1122 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 KRT8P51-201ENST00000438938 274 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 SEPT14P24-201ENST00000447236 180 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC083899.1-201ENST00000454465 3819 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 SNORD11.1-201ENST00000459482 85 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 RPL6P9-201ENST00000466502 859 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 DUTP1-201ENST00000493631 470 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC134050.1-201ENST00000495088 933 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 OR8G3P-201ENST00000533406 921 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AGGF1P7-201ENST00000562369 913 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 MTCYBP28-201ENST00000566728 1132 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 OR2BH1P-201ENST00000608850 864 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC025574.2-201ENST00000615621 514 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AL121890.3-201ENST00000618494 516 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AC107021.2-201ENST00000567714 2095 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 CCT8P1-201ENST00000413611 1657 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 SNORD116-2-201ENST00000384274 95 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 SNORD116-6-201ENST00000384711 96 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 RNA5SP339-201ENST00000390987 122 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AL109941.1-201ENST00000401925 229 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 VTA1P1-201ENST00000414044 866 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 LIPT1P1-201ENST00000415870 1186 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 NPM1P18-201ENST00000434232 732 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 RPL34P26-201ENST00000445636 354 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 OFD1P7Y-201ENST00000454643 1155 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 NDUFS5P6-201ENST00000529136 295 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AC090424.1-201ENST00000535243 736 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 PWAR1-201ENST00000624188 2414 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SLC44A4Q53GD3 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 MIR137-201ENST00000385223 102 ntBASIC5.69□□□□□ -1.5
SLC44A4Q53GD3 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms