Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 MTCYBP42-201ENST00000444653 1130 ntBASIC5.66□□□□□ -1.5
NEK3P51956 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.66□□□□□ -1.5
NEK3P51956 AC239809.1-201ENST00000450470 217 ntBASIC5.66□□□□□ -1.5
NEK3P51956 GAPDHP14-201ENST00000450472 937 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC5.66□□□□□ -1.5
NEK3P51956 AC074386.1-201ENST00000476560 767 ntBASIC5.66□□□□□ -1.5
NEK3P51956 SIAH1P1-201ENST00000479411 923 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AC108693.1-201ENST00000496068 432 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.66□□□□□ -1.5
NEK3P51956 RN7SKP253-201ENST00000516424 309 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AC020937.1-201ENST00000519677 1013 ntBASIC5.66□□□□□ -1.5
NEK3P51956 IGKV2-18-201ENST00000522607 343 ntBASIC5.66□□□□□ -1.5
NEK3P51956 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.66□□□□□ -1.5
NEK3P51956 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.66□□□□□ -1.5
NEK3P51956 DEFB130C-202ENST00000530001 230 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.66□□□□□ -1.5
NEK3P51956 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.66□□□□□ -1.5
NEK3P51956 AC090022.1-201ENST00000546569 311 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.66□□□□□ -1.5
NEK3P51956 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.66□□□□□ -1.5
NEK3P51956 MIR4311-201ENST00000580794 100 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC5.66□□□□□ -1.5
NEK3P51956 AC010487.1-201ENST00000594408 1172 ntBASIC5.66□□□□□ -1.5
NEK3P51956 PCNAP1-202ENST00000595299 752 ntBASIC5.66□□□□□ -1.5
NEK3P51956 PART1_2.1-201ENST00000612397 250 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AL035461.2-201ENST00000619201 524 ntBASIC5.66□□□□□ -1.5
NEK3P51956 VN1R7P-201ENST00000619242 903 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AC138965.3-201ENST00000623875 498 ntBASIC5.66□□□□□ -1.5
NEK3P51956 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
NEK3P51956 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
NEK3P51956 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 TCP11X1-202ENST00000622971 1372 ntBASIC5.66□□□□□ -1.5
NEK3P51956 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.66□□□□□ -1.5
NEK3P51956 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NEK3P51956 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.65□□□□□ -1.5
NEK3P51956 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.65□□□□□ -1.5
NEK3P51956 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
NEK3P51956 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 AC138393.1-206ENST00000540997 1886 ntBASIC5.65□□□□□ -1.5
NEK3P51956 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.65□□□□□ -1.5
NEK3P51956 RNA5SP319-201ENST00000362768 119 ntBASIC5.65□□□□□ -1.5
NEK3P51956 RNU4-2-201ENST00000365668 141 ntBASIC5.65□□□□□ -1.5
NEK3P51956 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC5.65□□□□□ -1.5
NEK3P51956 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 Y_RNA.578-201ENST00000390903 88 ntBASIC5.65□□□□□ -1.5
NEK3P51956 MCTS2P-201ENST00000394552 546 ntBASIC5.65□□□□□ -1.5
NEK3P51956 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.65□□□□□ -1.5
NEK3P51956 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC5.65□□□□□ -1.5
NEK3P51956 RNF10P1-201ENST00000418589 369 ntBASIC5.65□□□□□ -1.5
NEK3P51956 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC5.65□□□□□ -1.5
NEK3P51956 AL009174.1-201ENST00000426577 416 ntBASIC5.65□□□□□ -1.5
NEK3P51956 TMEM183AP1-205ENST00000432739 290 ntBASIC5.65□□□□□ -1.5
NEK3P51956 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC5.65□□□□□ -1.5
NEK3P51956 AC234064.1-201ENST00000436312 247 ntBASIC5.65□□□□□ -1.5
NEK3P51956 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC5.65□□□□□ -1.5
NEK3P51956 EEF1A1P1-201ENST00000447052 739 ntBASIC5.65□□□□□ -1.5
NEK3P51956 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.65□□□□□ -1.5
NEK3P51956 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.65□□□□□ -1.5
NEK3P51956 VDAC2P4-201ENST00000452925 711 ntBASIC5.65□□□□□ -1.5
NEK3P51956 MRPL35P4-201ENST00000453682 566 ntBASIC5.65□□□□□ -1.5
NEK3P51956 CBX1P2-201ENST00000453841 458 ntBASIC5.65□□□□□ -1.5
NEK3P51956 AL133445.1-201ENST00000467051 452 ntBASIC5.65□□□□□ -1.5
NEK3P51956 RPS26P39-201ENST00000469206 341 ntBASIC5.65□□□□□ -1.5
NEK3P51956 AC100832.1-201ENST00000471945 383 ntBASIC5.65□□□□□ -1.5
NEK3P51956 AC020898.1-201ENST00000474167 787 ntBASIC5.65□□□□□ -1.5
NEK3P51956 RN7SL214P-201ENST00000487317 265 ntBASIC5.65□□□□□ -1.5
NEK3P51956 RN7SL184P-201ENST00000488308 297 ntBASIC5.65□□□□□ -1.5
NEK3P51956 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC5.65□□□□□ -1.5
NEK3P51956 AC093752.1-206ENST00000511823 336 ntBASIC5.65□□□□□ -1.5
NEK3P51956 EIF3KP3-201ENST00000514461 639 ntBASIC5.65□□□□□ -1.5
NEK3P51956 BX510359.5-201ENST00000515651 304 ntBASIC5.65□□□□□ -1.5
NEK3P51956 RNA5SP230-201ENST00000517039 122 ntBASIC5.65□□□□□ -1.5
NEK3P51956 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC5.65□□□□□ -1.5
NEK3P51956 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 RBM22P1-201ENST00000578589 1214 ntBASIC5.65□□□□□ -1.5
NEK3P51956 MIR4489-201ENST00000578869 62 ntBASIC5.65□□□□□ -1.5
NEK3P51956 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.65□□□□□ -1.5
NEK3P51956 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.65□□□□□ -1.5
NEK3P51956 AL512624.1-201ENST00000613638 469 ntBASIC5.65□□□□□ -1.5
NEK3P51956 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.65□□□□□ -1.5
NEK3P51956 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NEK3P51956 MIR8080-201ENST00000622224 89 ntBASIC5.65□□□□□ -1.5
NEK3P51956 OR1S1-201ENST00000624470 978 ntBASIC5.65□□□□□ -1.5
NEK3P51956 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
NEK3P51956 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
NEK3P51956 AC111188.2-201ENST00000529697 1387 ntBASIC5.65□□□□□ -1.51
NEK3P51956 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
NEK3P51956 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
NEK3P51956 AC068870.1-201ENST00000563737 2455 ntBASIC5.65□□□□□ -1.51
NEK3P51956 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms