Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.75□□□□□ -1.49
COL18A1P39060 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
COL18A1P39060 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
COL18A1P39060 AC109446.4-201ENST00000623235 2755 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
COL18A1P39060 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.75□□□□□ -1.49
COL18A1P39060 SNORA11.1-201ENST00000408133 129 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.75□□□□□ -1.49
COL18A1P39060 TBCAP1-201ENST00000436520 327 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 RPL7L1P8-201ENST00000469911 741 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 RN7SL812P-201ENST00000493791 279 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 AC146944.2-203ENST00000502493 354 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.75□□□□□ -1.49
COL18A1P39060 PARP4P3-201ENST00000510265 317 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 AC139495.1-202ENST00000513164 354 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 RNA5SP360-201ENST00000516555 118 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.75□□□□□ -1.49
COL18A1P39060 DYNLL1P4-201ENST00000549314 266 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL18A1P39060 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.75□□□□□ -1.49
COL18A1P39060 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.74□□□□□ -1.49
COL18A1P39060 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL18A1P39060 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
COL18A1P39060 TCP11X1-202ENST00000622971 1372 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
COL18A1P39060 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.74□□□□□ -1.49
COL18A1P39060 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL18A1P39060 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.74□□□□□ -1.49
COL18A1P39060 AL672167.2-201ENST00000377164 879 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL18A1P39060 SNORA5.1-201ENST00000384275 131 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL18A1P39060 ENSAP1-201ENST00000392855 326 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.74□□□□□ -1.49
COL18A1P39060 AC062016.2-201ENST00000420950 676 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.74□□□□□ -1.49
COL18A1P39060 CDY14P-201ENST00000431260 1014 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 CDY12P-201ENST00000440679 1015 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 CDY13P-201ENST00000445813 1015 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.74□□□□□ -1.49
COL18A1P39060 CDY23P-201ENST00000451661 1014 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.74□□□□□ -1.49
COL18A1P39060 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.74□□□□□ -1.49
COL18A1P39060 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.74□□□□□ -1.49
COL18A1P39060 AC025175.1-201ENST00000606482 759 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 MIR6075-201ENST00000620782 95 ntBASIC5.74□□□□□ -1.49
COL18A1P39060 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL18A1P39060 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.74□□□□□ -1.49
COL18A1P39060 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL18A1P39060 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.74□□□□□ -1.49
COL18A1P39060 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL18A1P39060 AC011755.1-201ENST00000623763 2049 ntBASIC5.73□□□□□ -1.49
COL18A1P39060 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL18A1P39060 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL18A1P39060 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL18A1P39060 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL18A1P39060 AL607077.1-201ENST00000401718 499 ntBASIC5.73□□□□□ -1.49
COL18A1P39060 FCF1P5-201ENST00000406490 482 ntBASIC5.73□□□□□ -1.49
COL18A1P39060 AC115285.1-201ENST00000424879 736 ntBASIC5.73□□□□□ -1.49
COL18A1P39060 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.73□□□□□ -1.49
COL18A1P39060 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.73□□□□□ -1.49
COL18A1P39060 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.73□□□□□ -1.49
COL18A1P39060 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL18A1P39060 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.73□□□□□ -1.49
COL18A1P39060 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.73□□□□□ -1.49
COL18A1P39060 RPL23AP97-201ENST00000568955 471 ntBASIC5.73□□□□□ -1.49
COL18A1P39060 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.73□□□□□ -1.49
COL18A1P39060 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
COL18A1P39060 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL18A1P39060 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
COL18A1P39060 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.73□□□□□ -1.49
COL18A1P39060 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
COL18A1P39060 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL18A1P39060 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL18A1P39060 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.73□□□□□ -1.49
COL18A1P39060 AC106871.1-201ENST00000568324 3102 ntBASIC5.73□□□□□ -1.49
COL18A1P39060 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.73□□□□□ -1.49
COL18A1P39060 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.72□□□□□ -1.49
COL18A1P39060 AC093578.1-201ENST00000415219 368 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 HMGB3P5-201ENST00000428894 612 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.72□□□□□ -1.49
COL18A1P39060 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.72□□□□□ -1.49
COL18A1P39060 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.72□□□□□ -1.49
COL18A1P39060 DDX39BP2-208ENST00000453923 258 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 AC104164.2-201ENST00000496953 495 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.72□□□□□ -1.49
COL18A1P39060 KCTD9P2-201ENST00000512203 1013 ntBASIC5.72□□□□□ -1.49
COL18A1P39060 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.72□□□□□ -1.49
COL18A1P39060 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.72□□□□□ -1.49
COL18A1P39060 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms