Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 MIR105-2-201ENST00000385083 81 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SMARCA1P28370 HIGD1AP15-201ENST00000416198 280 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SMARCA1P28370 AC092648.1-201ENST00000425870 423 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 HSPE1P16-201ENST00000426640 348 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC6.02□□□□□ -1.45
SMARCA1P28370 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC6.02□□□□□ -1.45
SMARCA1P28370 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.02□□□□□ -1.45
SMARCA1P28370 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.02□□□□□ -1.45
SMARCA1P28370 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC6.02□□□□□ -1.45
SMARCA1P28370 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC6.02□□□□□ -1.45
SMARCA1P28370 CBX1P2-201ENST00000453841 458 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC009127.1-201ENST00000467090 155 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC021205.1-201ENST00000468797 348 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 RPSAP51-201ENST00000497462 645 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC6.02□□□□□ -1.45
SMARCA1P28370 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC6.02□□□□□ -1.45
SMARCA1P28370 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC6.02□□□□□ -1.45
SMARCA1P28370 AC093752.1-206ENST00000511823 336 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC6.02□□□□□ -1.45
SMARCA1P28370 EIF3KP3-201ENST00000514461 639 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 RN7SKP141-201ENST00000516167 338 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 RNU6-311P-201ENST00000516224 102 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.02□□□□□ -1.45
SMARCA1P28370 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC6.02□□□□□ -1.45
SMARCA1P28370 AP001636.2-201ENST00000525517 696 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC6.02□□□□□ -1.45
SMARCA1P28370 OR10G5P-201ENST00000532733 358 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.02□□□□□ -1.45
SMARCA1P28370 ZNF971P-201ENST00000562068 1249 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 MIR4789-201ENST00000577469 82 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 RN7SL290P-201ENST00000578661 300 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.02□□□□□ -1.45
SMARCA1P28370 Z82195.1-201ENST00000604558 398 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 TAS2R6P-201ENST00000605022 826 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC012557.1-201ENST00000607115 611 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AL121612.2-201ENST00000612261 482 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC004232.3-201ENST00000622977 525 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AP002791.1-201ENST00000623291 381 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC104985.3-201ENST00000623479 597 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC021106.3-201ENST00000623925 531 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 MTND2P41-201ENST00000637599 773 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 AC017104.5-201ENST00000637647 639 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 LINC01739-205ENST00000641890 573 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
SMARCA1P28370 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 AL360270.2-201ENST00000562952 5985 ntBASIC6.02□□□□□ -1.45
SMARCA1P28370 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.02□□□□□ -1.45
SMARCA1P28370 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SMARCA1P28370 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.01□□□□□ -1.45
SMARCA1P28370 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 SAMMSON-213ENST00000641336 1521 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
SMARCA1P28370 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.01□□□□□ -1.45
SMARCA1P28370 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.01□□□□□ -1.45
SMARCA1P28370 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 MIR765-201ENST00000390226 114 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 USP9YP21-201ENST00000420603 432 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 Z77249.1-201ENST00000444622 1175 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 AC093166.2-201ENST00000455969 1017 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC6.01□□□□□ -1.45
SMARCA1P28370 BX284632.1-201ENST00000478218 541 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 CDH12P2-201ENST00000504393 298 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 AC097173.1-201ENST00000505862 819 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 FTH1P11-201ENST00000517577 551 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC6.01□□□□□ -1.45
SMARCA1P28370 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC6.01□□□□□ -1.45
SMARCA1P28370 AL049830.4-201ENST00000555149 351 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC6.01□□□□□ -1.45
SMARCA1P28370 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC6.01□□□□□ -1.45
SMARCA1P28370 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.01□□□□□ -1.45
SMARCA1P28370 AC027455.1-201ENST00000574104 594 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 MTCYBP13-201ENST00000578634 1093 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 AC013244.1-201ENST00000604279 193 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 SDR42E1P1-201ENST00000611327 477 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
SMARCA1P28370 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
SMARCA1P28370 AL603750.1-201ENST00000624216 1717 ntBASIC6.01□□□□□ -1.45
SMARCA1P28370 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SMARCA1P28370 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.01□□□□□ -1.45
SMARCA1P28370 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
SMARCA1P28370 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms