Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 OR5M2P-201ENST00000529003 936 ntBASIC6.63□□□□□ -1.35
MSX1P28360 SAA3P-201ENST00000533267 365 ntBASIC6.63□□□□□ -1.35
MSX1P28360 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.63□□□□□ -1.35
MSX1P28360 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX1P28360 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC6.63□□□□□ -1.35
MSX1P28360 AC008555.1-201ENST00000561778 2757 ntBASIC6.63□□□□□ -1.35
MSX1P28360 EEF1B2P1-201ENST00000567221 672 ntBASIC6.63□□□□□ -1.35
MSX1P28360 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC6.63□□□□□ -1.35
MSX1P28360 AC061975.3-201ENST00000583209 244 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AC011891.2-201ENST00000604949 397 ntBASIC6.63□□□□□ -1.35
MSX1P28360 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC6.63□□□□□ -1.35
MSX1P28360 AL121809.2-201ENST00000613169 341 ntBASIC6.63□□□□□ -1.35
MSX1P28360 HOTTIP_2.1-201ENST00000616633 376 ntBASIC6.63□□□□□ -1.35
MSX1P28360 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 AC005753.1-201ENST00000623837 618 ntBASIC6.63□□□□□ -1.35
MSX1P28360 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSX1P28360 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.63□□□□□ -1.35
MSX1P28360 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 LIMA1-216ENST00000552909 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 AC006213.6-201ENST00000623722 4179 ntBASIC6.62□□□□□ -1.35
MSX1P28360 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 CD36-221ENST00000534394 1741 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 AC092447.10-201ENST00000620607 1652 ntBASIC6.62□□□□□ -1.35
MSX1P28360 KARSP2-201ENST00000415696 1639 ntBASIC6.62□□□□□ -1.35
MSX1P28360 OR4G1P-203ENST00000641984 1631 ntBASIC6.62□□□□□ -1.35
MSX1P28360 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 AP001350.1-201ENST00000601906 1524 ntBASIC6.62□□□□□ -1.35
MSX1P28360 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
MSX1P28360 AC073343.1-201ENST00000328239 651 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC067945.1-201ENST00000342609 618 ntBASIC6.62□□□□□ -1.35
MSX1P28360 RNA5SP429-201ENST00000363688 109 ntBASIC6.62□□□□□ -1.35
MSX1P28360 RNU12-2P-201ENST00000364789 156 ntBASIC6.62□□□□□ -1.35
MSX1P28360 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 SNORA70.8-201ENST00000384231 136 ntBASIC6.62□□□□□ -1.35
MSX1P28360 MT-TG-201ENST00000387429 68 ntBASIC6.62□□□□□ -1.35
MSX1P28360 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
MSX1P28360 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 AL136116.1-201ENST00000403591 381 ntBASIC6.62□□□□□ -1.35
MSX1P28360 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 RPL35AP24-201ENST00000413846 330 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 SLC35E1P1-201ENST00000419313 864 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 AC104837.2-201ENST00000427236 424 ntBASIC6.62□□□□□ -1.35
MSX1P28360 FTH1P10-202ENST00000430907 550 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 RSU1P2-202ENST00000437884 485 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 RPL12P31-201ENST00000478433 450 ntBASIC6.62□□□□□ -1.35
MSX1P28360 RN7SL569P-201ENST00000494652 288 ntBASIC6.62□□□□□ -1.35
MSX1P28360 EIF4EP3-201ENST00000498782 656 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC008967.1-201ENST00000504843 163 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 AC026782.1-201ENST00000512952 449 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC022616.6-201ENST00000520479 119 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.62□□□□□ -1.35
MSX1P28360 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 AC092718.4-201ENST00000566639 716 ntBASIC6.62□□□□□ -1.35
MSX1P28360 HMGB1P6-201ENST00000569046 646 ntBASIC6.62□□□□□ -1.35
MSX1P28360 MIR3167-201ENST00000579623 85 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 AC009955.2-201ENST00000597288 542 ntBASIC6.62□□□□□ -1.35
MSX1P28360 RPL26P30-202ENST00000602923 645 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AP005329.3-201ENST00000609924 686 ntBASIC6.62□□□□□ -1.35
MSX1P28360 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 AC006924.1-201ENST00000610750 559 ntBASIC6.62□□□□□ -1.35
MSX1P28360 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
MSX1P28360 AC211433.3-201ENST00000623770 375 ntBASIC6.62□□□□□ -1.35
MSX1P28360 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC6.62□□□□□ -1.35
MSX1P28360 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 MTND4LP32-201ENST00000636111 270 ntBASIC6.62□□□□□ -1.35
MSX1P28360 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
MSX1P28360 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms