Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RN7SL222P-201ENST00000476452 299 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC091959.2-201ENST00000477363 321 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 RPL7P40-201ENST00000481703 745 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC093270.2-201ENST00000486157 792 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC118282.2-201ENST00000508739 374 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 MRPS33P3-201ENST00000513456 322 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 HMGN2P6-201ENST00000551091 273 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC109446.2-201ENST00000567872 497 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC022662.1-201ENST00000580252 331 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 PIGPP4-201ENST00000584447 307 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AP001542.2-201ENST00000593141 364 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC010620.1-201ENST00000601088 1102 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 Z99497.2-201ENST00000603634 310 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AL358072.1-201ENST00000604156 575 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AL022161.1-201ENST00000604390 213 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC126915.2-201ENST00000610957 190 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC009318.3-201ENST00000616916 503 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC118658.2-201ENST00000618697 459 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AP000676.3-201ENST00000623299 569 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC145207.9-201ENST00000623802 325 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC020633.1-201ENST00000468439 2247 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC000367.1-201ENST00000452711 1766 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC053481.2-202ENST00000582394 1500 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 FAM133CP-201ENST00000332869 704 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RNU6-98P-201ENST00000384173 107 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AL645927.1-201ENST00000396783 406 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 MIR937-201ENST00000401271 86 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AL136131.1-201ENST00000406079 803 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RN7SKP222-201ENST00000410651 315 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RN7SKP279-201ENST00000411383 298 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 DPPA2P2-201ENST00000418220 897 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC090960.1-201ENST00000421072 306 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC005033.1-201ENST00000428904 813 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RPS27P18-201ENST00000431701 247 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 HSD52-202ENST00000436225 772 ntTSL 3 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 MTND4P32-201ENST00000437189 1237 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 BX679664.2-201ENST00000439282 283 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RPS26P30-201ENST00000443431 335 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AL133217.1-201ENST00000450980 425 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RN7SL329P-201ENST00000467740 299 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 ATP5LP5-201ENST00000483050 299 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 SCARNA16.4-201ENST00000516956 187 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 MTCO1P47-201ENST00000523889 1271 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC087373.1-201ENST00000524920 491 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 HMGB1P40-201ENST00000525121 540 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 GCSHP4-201ENST00000538792 439 ntBASIC5.7□□□□□ -1.5
TDP1Q9NUW8 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.7□□□□□ -1.5
TDP1Q9NUW8 AC137627.1-201ENST00000545761 289 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms