Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC138907.10-201ENST00000623708 983 ntBASIC6.16□□□□□ -1.42
NUP88Q99567 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.16□□□□□ -1.42
NUP88Q99567 AC083837.1-201ENST00000565297 2994 ntBASIC6.16□□□□□ -1.42
NUP88Q99567 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
NUP88Q99567 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.16□□□□□ -1.42
NUP88Q99567 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
NUP88Q99567 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC6.16□□□□□ -1.42
NUP88Q99567 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
NUP88Q99567 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.16□□□□□ -1.42
NUP88Q99567 AC079097.1-201ENST00000512187 1399 ntBASIC6.16□□□□□ -1.42
NUP88Q99567 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.16□□□□□ -1.42
NUP88Q99567 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
NUP88Q99567 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.16□□□□□ -1.42
NUP88Q99567 AC093671.1-201ENST00000624981 2929 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
NUP88Q99567 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
NUP88Q99567 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.15□□□□□ -1.42
NUP88Q99567 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
NUP88Q99567 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NUP88Q99567 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
NUP88Q99567 RNU4-4P-201ENST00000364588 130 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 HMGB3P7-201ENST00000400214 611 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AL109941.1-201ENST00000401925 229 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AL645733.1-201ENST00000402250 217 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
NUP88Q99567 AC079809.1-201ENST00000415468 276 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC6.15□□□□□ -1.42
NUP88Q99567 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC6.15□□□□□ -1.42
NUP88Q99567 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC6.15□□□□□ -1.42
NUP88Q99567 CYCSP11-201ENST00000436426 315 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC6.15□□□□□ -1.42
NUP88Q99567 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
NUP88Q99567 PSAT1P4-201ENST00000466500 526 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AC096741.1-201ENST00000472250 846 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AC109462.1-201ENST00000491087 368 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AC231760.1-201ENST00000498002 260 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC6.15□□□□□ -1.42
NUP88Q99567 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 RN7SKP265-201ENST00000516448 223 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AP001207.2-201ENST00000519490 539 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.15□□□□□ -1.42
NUP88Q99567 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC6.15□□□□□ -1.42
NUP88Q99567 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC6.15□□□□□ -1.42
NUP88Q99567 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
NUP88Q99567 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC6.15□□□□□ -1.42
NUP88Q99567 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC6.15□□□□□ -1.42
NUP88Q99567 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
NUP88Q99567 AC009027.1-201ENST00000604510 479 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 RNU4-5P-201ENST00000607255 135 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AC244107.2-201ENST00000611773 76 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AL162574.1-201ENST00000615702 950 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AP002799.1-201ENST00000623552 423 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 AC099654.6-201ENST00000636487 512 ntBASIC6.15□□□□□ -1.42
NUP88Q99567 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
NUP88Q99567 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NUP88Q99567 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
NUP88Q99567 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
NUP88Q99567 AC100757.1-201ENST00000616872 1835 ntBASIC6.15□□□□□ -1.43
NUP88Q99567 GTF2H2B-203ENST00000508065 1432 ntBASIC6.15□□□□□ -1.43
NUP88Q99567 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
NUP88Q99567 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
NUP88Q99567 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
NUP88Q99567 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.15□□□□□ -1.43
NUP88Q99567 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.15□□□□□ -1.43
NUP88Q99567 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
NUP88Q99567 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
NUP88Q99567 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.14□□□□□ -1.43
NUP88Q99567 CCT8P1-201ENST00000413611 1657 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
NUP88Q99567 AC092747.4-201ENST00000620519 1861 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC6.14□□□□□ -1.43
NUP88Q99567 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
NUP88Q99567 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
NUP88Q99567 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
NUP88Q99567 RNA5SP305-201ENST00000362665 119 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
NUP88Q99567 MIR585-201ENST00000384887 94 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 MIR550A3-201ENST00000390735 95 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC6.14□□□□□ -1.43
NUP88Q99567 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.14□□□□□ -1.43
NUP88Q99567 AC013404.1-201ENST00000413068 249 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC6.14□□□□□ -1.43
NUP88Q99567 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
NUP88Q99567 HMGB3P5-201ENST00000428894 612 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC6.14□□□□□ -1.43
NUP88Q99567 NDUFB4P8-201ENST00000435351 367 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC6.14□□□□□ -1.43
NUP88Q99567 ELOCP11-201ENST00000436690 332 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 AC092170.1-201ENST00000440211 356 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 ELOCP16-201ENST00000444494 332 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.14□□□□□ -1.43
NUP88Q99567 SEPT14P24-201ENST00000447236 180 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC6.14□□□□□ -1.43
NUP88Q99567 AC092155.2-201ENST00000454675 477 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.14□□□□□ -1.43
NUP88Q99567 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC6.14□□□□□ -1.43
NUP88Q99567 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.14□□□□□ -1.43
NUP88Q99567 AC114322.1-201ENST00000506771 926 ntBASIC6.14□□□□□ -1.43
NUP88Q99567 EIF3KP3-201ENST00000514461 639 ntBASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms