Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.93□□□□□ -1.46
HPS3Q969F9 AL137100.1-201ENST00000556703 1620 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
HPS3Q969F9 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
HPS3Q969F9 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.93□□□□□ -1.46
HPS3Q969F9 MIR525-201ENST00000384978 85 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 RN7SKP97-201ENST00000410966 333 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.93□□□□□ -1.46
HPS3Q969F9 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.93□□□□□ -1.46
HPS3Q969F9 BTF3P8-201ENST00000414577 526 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.93□□□□□ -1.46
HPS3Q969F9 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 VTI1BP4-201ENST00000427516 527 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC5.93□□□□□ -1.46
HPS3Q969F9 CR769776.1-201ENST00000441254 787 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 ARL5AP2-201ENST00000444698 533 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 AC090804.1-201ENST00000448870 490 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.93□□□□□ -1.46
HPS3Q969F9 PTGES3P5-201ENST00000455109 434 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 RPL23AP37-201ENST00000479658 549 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 MTCO3P35-201ENST00000485582 781 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC5.93□□□□□ -1.46
HPS3Q969F9 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.93□□□□□ -1.46
HPS3Q969F9 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC5.93□□□□□ -1.46
HPS3Q969F9 HMGB1P44-201ENST00000508597 572 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.93□□□□□ -1.46
HPS3Q969F9 RNA5SP373-201ENST00000517271 95 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HPS3Q969F9 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HPS3Q969F9 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC5.93□□□□□ -1.46
HPS3Q969F9 RN7SL290P-201ENST00000578661 300 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HPS3Q969F9 AL589674.2-201ENST00000604304 337 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 AC009027.1-201ENST00000604510 479 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HPS3Q969F9 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.93□□□□□ -1.46
HPS3Q969F9 uc_338.7-201ENST00000621834 124 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 MIR8080-201ENST00000622224 89 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 AP003400.3-201ENST00000624904 346 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 GMFB-210ENST00000628554 639 ntTSL 4 BASIC5.93□□□□□ -1.46
HPS3Q969F9 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
HPS3Q969F9 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.93□□□□□ -1.46
HPS3Q969F9 AC090897.3-201ENST00000636973 1157 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.93□□□□□ -1.46
HPS3Q969F9 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HPS3Q969F9 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.93□□□□□ -1.46
HPS3Q969F9 AL450345.1-202ENST00000605741 3881 ntBASIC5.93□□□□□ -1.46
HPS3Q969F9 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HPS3Q969F9 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HPS3Q969F9 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.92□□□□□ -1.46
HPS3Q969F9 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.92□□□□□ -1.46
HPS3Q969F9 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
HPS3Q969F9 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HPS3Q969F9 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
HPS3Q969F9 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.92□□□□□ -1.46
HPS3Q969F9 RN7SKP74-201ENST00000362849 309 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 RNU4-68P-201ENST00000364314 141 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 SNORD116-12-201ENST00000384468 92 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 EI24P3-201ENST00000399046 1062 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 RN7SKP293-201ENST00000411389 296 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 RPS7P9-201ENST00000414704 586 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 AC092634.2-201ENST00000428146 1010 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.92□□□□□ -1.46
HPS3Q969F9 AL121776.1-201ENST00000429337 372 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 CYCSP12-201ENST00000437729 300 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC5.92□□□□□ -1.46
HPS3Q969F9 HMGB3P6-201ENST00000444896 598 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 NOP56P2-201ENST00000447491 769 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.92□□□□□ -1.46
HPS3Q969F9 AL672138.1-201ENST00000450604 1015 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 AL133244.1-201ENST00000456007 258 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC5.92□□□□□ -1.46
HPS3Q969F9 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC5.92□□□□□ -1.46
HPS3Q969F9 RPL7P40-201ENST00000481703 745 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 UBA52P7-201ENST00000486088 380 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.92□□□□□ -1.46
HPS3Q969F9 HPRT1P2-201ENST00000505250 544 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.92□□□□□ -1.46
HPS3Q969F9 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC5.92□□□□□ -1.46
HPS3Q969F9 PRELID3BP4-201ENST00000515476 571 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.92□□□□□ -1.46
HPS3Q969F9 CDC42P3-201ENST00000518493 633 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 AC083923.1-201ENST00000523708 376 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.92□□□□□ -1.46
HPS3Q969F9 AP002373.2-201ENST00000541631 1060 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.92□□□□□ -1.46
HPS3Q969F9 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.92□□□□□ -1.46
HPS3Q969F9 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HPS3Q969F9 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.92□□□□□ -1.46
HPS3Q969F9 MIR7853-201ENST00000584820 132 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.92□□□□□ -1.46
HPS3Q969F9 ELOCP35-201ENST00000604289 336 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 FAM72A-208ENST00000607379 1139 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.92□□□□□ -1.46
HPS3Q969F9 AC005840.5-201ENST00000619166 599 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.92□□□□□ -1.46
HPS3Q969F9 AC011330.2-201ENST00000621680 635 ntBASIC5.92□□□□□ -1.46
HPS3Q969F9 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
HPS3Q969F9 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms