Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 USP9YP2-201ENST00000504503 1000 ntBASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 AK4P6-201ENST00000505168 528 ntBASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 USP9YP1-201ENST00000513521 1002 ntBASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 FKBP1BP1-201ENST00000553366 325 ntBASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 AC002044.3-201ENST00000623314 541 ntBASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 AC105074.1-201ENST00000623380 3095 ntBASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 AL731566.1-201ENST00000620490 1937 ntBASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SHROOM3Q8TF72 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SHROOM3Q8TF72 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.71□□□□□ -1.65
SHROOM3Q8TF72 IGKV7-3-201ENST00000357453 298 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AL583835.1-201ENST00000399570 407 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AC112206.1-201ENST00000468416 477 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AC005261.2-201ENST00000593427 4258 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AL355852.1-201ENST00000454081 1771 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AC008033.1-201ENST00000216407 1162 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 RNA5SP447-201ENST00000363749 119 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 RPL21P108-201ENST00000413857 481 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AL592293.2-201ENST00000422292 996 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AK3P4-201ENST00000504283 583 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 OR2L1P-202ENST00000641567 1023 ntBASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHROOM3Q8TF72 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 CCT8P1-201ENST00000413611 1657 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC009237.10-201ENST00000414112 510 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC009237.5-201ENST00000414271 501 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC140479.3-201ENST00000418944 1126 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 NMNAT1P2-201ENST00000435192 860 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 CYCSP34-201ENST00000458172 304 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 RPL36AP41-201ENST00000493820 306 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 MTCO1P49-201ENST00000523429 802 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC005520.3-201ENST00000602874 370 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 MIR6853-201ENST00000619642 74 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC021106.3-201ENST00000623925 531 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 AC006484.1-201ENST00000435086 1884 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHROOM3Q8TF72 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 RN7SKP74-201ENST00000362849 309 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 RNA5SP28-201ENST00000363841 119 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 RNU6-761P-201ENST00000384148 107 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 RPL36AP36-201ENST00000418616 301 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 AC004938.1-201ENST00000438468 308 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 AC090142.1-201ENST00000465776 462 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 AC109635.6-201ENST00000525487 1113 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 AL356218.2-201ENST00000605264 187 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 COX6CP4-201ENST00000605798 228 ntBASIC4.69□□□□□ -1.66
SHROOM3Q8TF72 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms