Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXF1Q12946 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXF1Q12946 AL138878.2-201ENST00000440581 1241 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXF1Q12946 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXF1Q12946 RPS29P22-201ENST00000472363 168 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 OR52A4P-201ENST00000472867 958 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXF1Q12946 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 AC093720.1-201ENST00000505681 714 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 AC111000.3-201ENST00000508057 576 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXF1Q12946 OR5AN2P-201ENST00000534535 896 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXF1Q12946 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.11□□□□□ -1.75
FOXF1Q12946 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.11□□□□□ -1.75
FOXF1Q12946 AC011270.1-201ENST00000558606 583 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 AC069061.3-201ENST00000582254 823 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXF1Q12946 AC023762.1-201ENST00000603280 584 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 AC008966.2-201ENST00000606157 453 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 AC100847.1-201ENST00000611316 481 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXF1Q12946 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXF1Q12946 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXF1Q12946 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
FOXF1Q12946 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXF1Q12946 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXF1Q12946 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXF1Q12946 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXF1Q12946 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXF1Q12946 AC125257.1-201ENST00000560400 2930 ntBASIC4.11□□□□□ -1.75
FOXF1Q12946 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXF1Q12946 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXF1Q12946 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
FOXF1Q12946 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.1□□□□□ -1.75
FOXF1Q12946 AL592148.3-201ENST00000608771 2646 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 MFSD8-216ENST00000641147 4009 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 MAPK10-286ENST00000641208 8747 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 SNORD96B-201ENST00000386148 79 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXF1Q12946 RPL21P91-201ENST00000429231 479 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXF1Q12946 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXF1Q12946 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXF1Q12946 AL162591.2-201ENST00000449634 317 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXF1Q12946 EIF2S2P5-201ENST00000457635 968 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 RPS23P1-201ENST00000491662 432 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXF1Q12946 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 AC103792.1-201ENST00000603591 919 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 AC020634.1-201ENST00000608701 549 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXF1Q12946 LINC01808-202ENST00000641680 1116 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 AC139769.1-204ENST00000472297 1931 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 CPHL1P-201ENST00000461341 3407 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXF1Q12946 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXF1Q12946 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXF1Q12946 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXF1Q12946 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXF1Q12946 AC104118.1-201ENST00000607625 1589 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 AL132640.2-201ENST00000559968 1698 ntBASIC4.1□□□□□ -1.75
FOXF1Q12946 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
FOXF1Q12946 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXF1Q12946 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 DDX18P4-201ENST00000511690 1966 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXF1Q12946 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
FOXF1Q12946 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXF1Q12946 RNU1-63P-201ENST00000383902 164 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 SDHCP2-201ENST00000398565 501 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 RPS3AP23-201ENST00000401762 784 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 RPL26P29-201ENST00000415623 438 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 AC092570.3-201ENST00000420113 693 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 RAD23BP1-201ENST00000421404 1227 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 AC006065.1-201ENST00000422539 802 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXF1Q12946 RPL7AP25-201ENST00000423357 805 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 RPEP3-201ENST00000425462 676 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 AP001324.1-201ENST00000428553 399 ntBASIC4.09□□□□□ -1.75
FOXF1Q12946 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXF1Q12946 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms