Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL18A1P39060 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL18A1P39060 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.78□□□□□ -1.48
COL18A1P39060 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.78□□□□□ -1.48
COL18A1P39060 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL18A1P39060 AC073136.1-201ENST00000449426 2884 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL18A1P39060 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL18A1P39060 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL18A1P39060 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.78□□□□□ -1.48
COL18A1P39060 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL18A1P39060 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
COL18A1P39060 RNA5SP307-201ENST00000362863 116 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 RPS20P14-201ENST00000412545 360 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 TPT1P2-201ENST00000413105 503 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.78□□□□□ -1.48
COL18A1P39060 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.78□□□□□ -1.48
COL18A1P39060 RPL5P32-201ENST00000454085 879 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AC010374.1-201ENST00000503762 1237 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AL592156.1-201ENST00000508758 304 ntBASIC5.78□□□□□ -1.48
COL18A1P39060 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.78□□□□□ -1.48
COL18A1P39060 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.78□□□□□ -1.48
COL18A1P39060 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.78□□□□□ -1.48
COL18A1P39060 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.78□□□□□ -1.48
COL18A1P39060 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
COL18A1P39060 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC5.78□□□□□ -1.48
COL18A1P39060 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.48
COL18A1P39060 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.48
COL18A1P39060 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.77□□□□□ -1.49
COL18A1P39060 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
COL18A1P39060 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.77□□□□□ -1.49
COL18A1P39060 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.49
COL18A1P39060 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.77□□□□□ -1.49
COL18A1P39060 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.77□□□□□ -1.49
COL18A1P39060 RLIMP1-201ENST00000339626 1680 ntBASIC5.77□□□□□ -1.49
COL18A1P39060 AL359922.3-201ENST00000624779 1670 ntBASIC5.77□□□□□ -1.49
COL18A1P39060 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.77□□□□□ -1.49
COL18A1P39060 RPL6P5-201ENST00000445678 828 ntBASIC5.77□□□□□ -1.49
COL18A1P39060 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.77□□□□□ -1.49
COL18A1P39060 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.77□□□□□ -1.49
COL18A1P39060 OR5BC1P-201ENST00000529327 739 ntBASIC5.77□□□□□ -1.49
COL18A1P39060 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.77□□□□□ -1.49
COL18A1P39060 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.77□□□□□ -1.49
COL18A1P39060 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC5.77□□□□□ -1.49
COL18A1P39060 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL18A1P39060 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL18A1P39060 AL136164.3-201ENST00000624429 3978 ntBASIC5.76□□□□□ -1.49
COL18A1P39060 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL18A1P39060 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
COL18A1P39060 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.76□□□□□ -1.49
COL18A1P39060 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
COL18A1P39060 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.76□□□□□ -1.49
COL18A1P39060 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL18A1P39060 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL18A1P39060 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.76□□□□□ -1.49
COL18A1P39060 RN7SKP202-201ENST00000410439 330 ntBASIC5.76□□□□□ -1.49
COL18A1P39060 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.76□□□□□ -1.49
COL18A1P39060 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.76□□□□□ -1.49
COL18A1P39060 AL133547.1-201ENST00000448546 220 ntBASIC5.76□□□□□ -1.49
COL18A1P39060 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.76□□□□□ -1.49
COL18A1P39060 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.76□□□□□ -1.49
COL18A1P39060 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.76□□□□□ -1.49
COL18A1P39060 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.76□□□□□ -1.49
COL18A1P39060 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
COL18A1P39060 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL18A1P39060 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
COL18A1P39060 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL18A1P39060 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.76□□□□□ -1.49
COL18A1P39060 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
COL18A1P39060 RN7SKP167-201ENST00000411047 285 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 ARAFP2-201ENST00000440565 559 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.75□□□□□ -1.49
COL18A1P39060 AL512326.1-201ENST00000443050 721 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 SERPINA7P1-201ENST00000443077 631 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.75□□□□□ -1.49
COL18A1P39060 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL18A1P39060 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
COL18A1P39060 RNA5SP116-201ENST00000516132 98 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 IGKV2-23-201ENST00000518729 323 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.75□□□□□ -1.49
COL18A1P39060 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.75□□□□□ -1.49
COL18A1P39060 MIR4660-201ENST00000583549 74 ntBASIC5.75□□□□□ -1.49
COL18A1P39060 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.75□□□□□ -1.49
COL18A1P39060 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.75□□□□□ -1.49
COL18A1P39060 AL161756.2-201ENST00000604597 246 ntBASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms