Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.46□□□□□ -1.7
SDC1P18827 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.46□□□□□ -1.7
SDC1P18827 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
SDC1P18827 DEFB109F-201ENST00000491870 277 ntBASIC4.46□□□□□ -1.7
SDC1P18827 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 PCNAP1-201ENST00000505363 709 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.46□□□□□ -1.7
SDC1P18827 RNU6-491P-201ENST00000516099 110 ntBASIC4.46□□□□□ -1.7
SDC1P18827 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.46□□□□□ -1.7
SDC1P18827 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.46□□□□□ -1.7
SDC1P18827 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.46□□□□□ -1.7
SDC1P18827 AC074029.2-201ENST00000551045 634 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AC012414.2-201ENST00000559474 187 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AC105129.1-201ENST00000560250 297 ntBASIC4.46□□□□□ -1.7
SDC1P18827 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.46□□□□□ -1.7
SDC1P18827 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 SNORD39.2-201ENST00000579995 76 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.46□□□□□ -1.7
SDC1P18827 OR7A19P-201ENST00000608051 733 ntBASIC4.46□□□□□ -1.7
SDC1P18827 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AL133370.2-201ENST00000619934 439 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AC004232.3-201ENST00000622977 525 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AL118508.4-201ENST00000624142 1176 ntBASIC4.46□□□□□ -1.7
SDC1P18827 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.46□□□□□ -1.7
SDC1P18827 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.46□□□□□ -1.7
SDC1P18827 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.46□□□□□ -1.7
SDC1P18827 AC139713.2-215ENST00000641428 5037 ntBASIC4.46□□□□□ -1.7
SDC1P18827 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDC1P18827 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
SDC1P18827 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.45□□□□□ -1.7
SDC1P18827 SNORA74A-201ENST00000364089 198 ntBASIC4.45□□□□□ -1.7
SDC1P18827 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 AL589647.1-201ENST00000402485 466 ntBASIC4.45□□□□□ -1.7
SDC1P18827 AL591848.1-201ENST00000413092 322 ntBASIC4.45□□□□□ -1.7
SDC1P18827 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.45□□□□□ -1.7
SDC1P18827 SETP10-201ENST00000424368 814 ntBASIC4.45□□□□□ -1.7
SDC1P18827 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.45□□□□□ -1.7
SDC1P18827 AC007559.1-201ENST00000428736 355 ntBASIC4.45□□□□□ -1.7
SDC1P18827 MRPS33P4-201ENST00000434892 317 ntBASIC4.45□□□□□ -1.7
SDC1P18827 CYCSP11-201ENST00000436426 315 ntBASIC4.45□□□□□ -1.7
SDC1P18827 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.45□□□□□ -1.7
SDC1P18827 OR52J1P-201ENST00000450596 932 ntBASIC4.45□□□□□ -1.7
SDC1P18827 TPRKBP1-201ENST00000456243 481 ntBASIC4.45□□□□□ -1.7
SDC1P18827 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.45□□□□□ -1.7
SDC1P18827 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.45□□□□□ -1.7
SDC1P18827 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.45□□□□□ -1.7
SDC1P18827 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.45□□□□□ -1.7
SDC1P18827 OR5AZ1P-201ENST00000527448 943 ntBASIC4.45□□□□□ -1.7
SDC1P18827 AC021006.3-201ENST00000530771 192 ntBASIC4.45□□□□□ -1.7
SDC1P18827 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.45□□□□□ -1.7
SDC1P18827 HMGN2P6-201ENST00000551091 273 ntBASIC4.45□□□□□ -1.7
SDC1P18827 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.45□□□□□ -1.7
SDC1P18827 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 MTND2P13-201ENST00000577438 1039 ntBASIC4.45□□□□□ -1.7
SDC1P18827 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.45□□□□□ -1.7
SDC1P18827 AC012467.1-201ENST00000607740 256 ntBASIC4.45□□□□□ -1.7
SDC1P18827 AC084036.1-201ENST00000609190 508 ntBASIC4.45□□□□□ -1.7
SDC1P18827 AC004241.3-201ENST00000611728 517 ntBASIC4.45□□□□□ -1.7
SDC1P18827 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 HSPD1P14-201ENST00000432666 1618 ntBASIC4.45□□□□□ -1.7
SDC1P18827 AC107021.2-201ENST00000567714 2095 ntBASIC4.45□□□□□ -1.7
SDC1P18827 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 AP001002.1-201ENST00000625148 1513 ntBASIC4.45□□□□□ -1.7
SDC1P18827 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
SDC1P18827 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 AC109780.1-201ENST00000451768 1344 ntBASIC4.45□□□□□ -1.7
SDC1P18827 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 MAPK10-303ENST00000641324 3959 ntBASIC4.45□□□□□ -1.7
SDC1P18827 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDC1P18827 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.45□□□□□ -1.7
SDC1P18827 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
SDC1P18827 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.44□□□□□ -1.7
SDC1P18827 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms