Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC4.67□□□□□ -1.66
SHOX2O60902 AL078604.1-201ENST00000404609 466 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 RNU4-34P-201ENST00000410431 124 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 OR51B3P-201ENST00000412287 913 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.67□□□□□ -1.66
SHOX2O60902 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 CFL1P1-202ENST00000432948 411 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.67□□□□□ -1.66
SHOX2O60902 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.67□□□□□ -1.66
SHOX2O60902 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.67□□□□□ -1.66
SHOX2O60902 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.67□□□□□ -1.66
SHOX2O60902 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.67□□□□□ -1.66
SHOX2O60902 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC4.67□□□□□ -1.66
SHOX2O60902 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.67□□□□□ -1.66
SHOX2O60902 RNA5SP34-201ENST00000516887 130 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.67□□□□□ -1.66
SHOX2O60902 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.67□□□□□ -1.66
SHOX2O60902 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.67□□□□□ -1.66
SHOX2O60902 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SHOX2O60902 AL360157.1-201ENST00000565962 87 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 AC010547.7-201ENST00000570323 333 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 AC073342.3-201ENST00000624211 193 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 AL929601.4-201ENST00000613011 1341 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
SHOX2O60902 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHOX2O60902 AC245100.2-201ENST00000454544 1679 ntBASIC4.67□□□□□ -1.66
SHOX2O60902 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SHOX2O60902 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SHOX2O60902 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SHOX2O60902 AC017007.4-201ENST00000503353 1352 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.66□□□□□ -1.66
SHOX2O60902 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.66□□□□□ -1.66
SHOX2O60902 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SHOX2O60902 AP000542.2-201ENST00000623199 6179 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SHOX2O60902 RN7SKP160-201ENST00000363804 340 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 SNORA67-201ENST00000384423 137 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 RNA5SP306-201ENST00000411087 107 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 AL391219.1-201ENST00000422570 483 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.66□□□□□ -1.66
SHOX2O60902 CDY14P-201ENST00000431260 1014 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 RPL7L1P9-201ENST00000431298 745 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 PRELID3BP10-201ENST00000431957 584 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 NPM1P48-201ENST00000436002 853 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 CDY12P-201ENST00000440679 1015 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 CDY13P-201ENST00000445813 1015 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SHOX2O60902 CDY23P-201ENST00000451661 1014 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SHOX2O60902 AC009963.2-201ENST00000453431 138 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 RPS27AP2-201ENST00000457576 465 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 RPSAP39-201ENST00000467439 883 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 AC007537.2-201ENST00000472093 511 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 RPS4XP1-201ENST00000482189 787 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.66□□□□□ -1.66
SHOX2O60902 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SHOX2O60902 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC4.66□□□□□ -1.66
SHOX2O60902 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
SHOX2O60902 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.66□□□□□ -1.66
SHOX2O60902 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.66□□□□□ -1.66
SHOX2O60902 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.66□□□□□ -1.66
SHOX2O60902 SNORD95-201ENST00000579879 68 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 ELOCP28-201ENST00000590044 317 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 AL023881.1-201ENST00000621088 301 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.66□□□□□ -1.66
SHOX2O60902 SAMMSON-209ENST00000641222 1100 ntBASIC4.66□□□□□ -1.66
SHOX2O60902 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.66□□□□□ -1.66
SHOX2O60902 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SHOX2O60902 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SHOX2O60902 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SHOX2O60902 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
SHOX2O60902 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
SHOX2O60902 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.66□□□□□ -1.66
SHOX2O60902 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.66□□□□□ -1.66
SHOX2O60902 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.66□□□□□ -1.66
SHOX2O60902 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SHOX2O60902 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SHOX2O60902 AC011493.1-201ENST00000596753 1632 ntBASIC4.65□□□□□ -1.66
SHOX2O60902 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.65□□□□□ -1.66
SHOX2O60902 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SHOX2O60902 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.65□□□□□ -1.66
SHOX2O60902 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.65□□□□□ -1.66
SHOX2O60902 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SHOX2O60902 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
SHOX2O60902 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
SHOX2O60902 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
SHOX2O60902 AC009804.1-201ENST00000400949 179 ntBASIC4.65□□□□□ -1.67
SHOX2O60902 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC4.65□□□□□ -1.67
SHOX2O60902 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.65□□□□□ -1.67
SHOX2O60902 JKAMPP1-201ENST00000413804 919 ntBASIC4.65□□□□□ -1.67
SHOX2O60902 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.65□□□□□ -1.67
SHOX2O60902 AL355433.1-201ENST00000422804 300 ntBASIC4.65□□□□□ -1.67
SHOX2O60902 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.65□□□□□ -1.67
SHOX2O60902 AC002553.2-201ENST00000453217 340 ntBASIC4.65□□□□□ -1.67
SHOX2O60902 AC009127.1-201ENST00000467090 155 ntBASIC4.65□□□□□ -1.67
SHOX2O60902 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC4.65□□□□□ -1.67
SHOX2O60902 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.65□□□□□ -1.67
SHOX2O60902 IGLVIV-53-201ENST00000520107 367 ntBASIC4.65□□□□□ -1.67
SHOX2O60902 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC4.65□□□□□ -1.67
SHOX2O60902 KCTD9P6-201ENST00000522306 950 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms