Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 SNURFL-201ENST00000309296 343 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 RNU6-792P-201ENST00000363490 107 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 RNU6-1251P-201ENST00000364502 107 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 SNORA72.3-201ENST00000365074 132 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 UBBP2-201ENST00000376781 231 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 RNU1-106P-201ENST00000384382 164 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC233289.1-201ENST00000403700 508 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 Z86062.1-201ENST00000406773 777 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC073052.1-201ENST00000440417 714 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 MOB1AP2-201ENST00000446060 614 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 CCRL1P1-201ENST00000449542 1053 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 RNA5SP103-201ENST00000459503 118 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 RN7SL517P-201ENST00000462240 305 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC090114.3-201ENST00000479267 829 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 RFPL4AP5-201ENST00000514977 504 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC004923.2-201ENST00000529649 369 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 UBTFL9-201ENST00000534504 1148 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 OR7E18P-201ENST00000592589 702 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AF129408.1-201ENST00000608767 431 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 SDR42E1P1-201ENST00000611327 477 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC009163.6-201ENST00000612367 342 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC018926.1-201ENST00000616335 435 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AC023510.2-201ENST00000622162 746 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 AL356118.1-201ENST00000635272 1078 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 LINC01739-205ENST00000641890 573 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 THAP12P4-201ENST00000528321 2266 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 NXF4-202ENST00000416098 1465 ntBASIC5.13□□□□□ -1.59
PCDH9Q9HC56 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
PCDH9Q9HC56 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AP001642.1-201ENST00000624727 2117 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 MIR765-201ENST00000390226 114 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 RANP4-201ENST00000413361 655 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 SFR1P2-201ENST00000421841 730 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 CKS1BP6-201ENST00000424932 240 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 NPM1P22-201ENST00000427761 952 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AL627224.1-201ENST00000448334 444 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 RHEBP2-201ENST00000450289 600 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 CLIC4P1-201ENST00000453177 535 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AC026348.1-201ENST00000462549 1053 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 NPM1P17-201ENST00000479221 602 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AC090686.1-201ENST00000481577 749 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AC004815.1-201ENST00000484185 331 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 HMGN2P25-201ENST00000486956 268 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AC010350.1-201ENST00000504908 231 ntBASIC5.12□□□□□ -1.59
PCDH9Q9HC56 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC5.12□□□□□ -1.59
PCDH9Q9HC56 AL592494.3-201ENST00000609485 464 ntBASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms