Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC012507.3-201ENST00000603556 477 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AL049634.3-201ENST00000604968 457 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC055876.5-201ENST00000605667 259 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC008536.2-201ENST00000607284 349 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC017083.3-201ENST00000609955 700 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 MTND4P12-201ENST00000498999 1377 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC010928.1-201ENST00000592477 1447 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AP000756.2-201ENST00000624168 2567 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC018628.1-201ENST00000624147 3819 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 OR5D18-201ENST00000333976 991 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 Y_RNA.38-201ENST00000362617 102 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 Y_RNA.89-201ENST00000363031 102 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RNU1-146P-201ENST00000364015 165 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RNU6-1226P-201ENST00000384317 107 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 PDCL3P5-201ENST00000398028 722 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 MTND4LP20-201ENST00000402379 270 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RPL7P25-201ENST00000404151 721 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RN7SKP117-201ENST00000410175 264 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AL359704.1-201ENST00000411586 781 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC017035.1-201ENST00000411999 1115 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RPSAP60-201ENST00000415403 880 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RPL36AP36-201ENST00000418616 301 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AKR1B10P1-201ENST00000425765 942 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC007365.2-201ENST00000428806 458 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RPS10P21-201ENST00000430654 475 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 MTCYBP45-201ENST00000435243 565 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC104850.1-201ENST00000435940 476 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 MYL6P3-201ENST00000436904 432 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 CBX1P1-201ENST00000440184 427 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RN7SL379P-201ENST00000479912 293 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 RN7SL518P-201ENST00000491887 280 ntBASIC5.36□□□□□ -1.55
CCDC140Q96MF4 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC140Q96MF4 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms