Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC233981.1-201ENST00000423224 461 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 PIGPP3-201ENST00000425307 415 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 MTND5P15-201ENST00000434246 349 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 TUBB4BP6-201ENST00000437576 479 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 OSTCP8-201ENST00000445117 448 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 RPS23P9-201ENST00000448848 438 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 RN7SL860P-201ENST00000473738 223 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 Y_RNA.654-201ENST00000497848 106 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC7.7□□□□□ -1.18
COL9A1P20849 RNU6-256P-201ENST00000516747 97 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 SCARNA18.2-201ENST00000516882 84 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 CARSP2-201ENST00000520688 277 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 AP005435.4-201ENST00000529514 284 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC7.7□□□□□ -1.18
COL9A1P20849 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC7.7□□□□□ -1.18
COL9A1P20849 AP000763.2-201ENST00000540641 163 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 HAUS8P1-201ENST00000549005 542 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 ZNF561-AS1-208ENST00000592851 782 ntTSL 3 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC006967.3-201ENST00000594086 1093 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC104687.2-201ENST00000604442 342 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 AL080312.2-201ENST00000613001 630 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 AL451054.1-201ENST00000621770 772 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 MIR6730-201ENST00000622213 67 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC008013.2-202ENST00000637965 364 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 GABRP-203ENST00000518525 3576 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 UBQLNL-201ENST00000380184 2313 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
COL9A1P20849 KPNA2P1-201ENST00000458289 1591 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 GRIA2-201ENST00000264426 3445 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 CGNL1-201ENST00000281282 7224 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 RRN3-203ENST00000429751 2198 ntTSL 2 BASIC7.7□□□□□ -1.18
COL9A1P20849 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
COL9A1P20849 AGBL4-203ENST00000371838 1353 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 ZNF10-201ENST00000248211 4441 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 AC135178.2-201ENST00000582471 3087 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC016747.1-201ENST00000420918 2532 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 CD46-205ENST00000358170 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 AMPD3-202ENST00000396553 3680 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC7.69□□□□□ -1.18
COL9A1P20849 AC114980.1-201ENST00000505668 3157 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC7.69□□□□□ -1.18
COL9A1P20849 SF3A3P1-201ENST00000446317 1477 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 GRHL1-201ENST00000324907 3563 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 SUPT7L-201ENST00000337768 4488 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 MTERF4-222ENST00000614476 4524 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 AC010894.3-201ENST00000442996 2400 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 AMMECR1L-201ENST00000272647 4658 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 MAPK10-290ENST00000641237 2826 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC7.69□□□□□ -1.18
COL9A1P20849 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 CACNA1D-202ENST00000350061 7636 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 AL512646.1-201ENST00000269395 1077 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 SNORD3E-201ENST00000362899 217 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 RNY4P16-201ENST00000364768 94 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 SNORA20.1-201ENST00000364790 130 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 RNU6-744P-201ENST00000365557 107 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 RNU6-1316P-201ENST00000384242 108 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 Y_RNA.785-201ENST00000384290 109 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC7.69□□□□□ -1.18
COL9A1P20849 MTCO3P19-201ENST00000415864 321 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC7.69□□□□□ -1.18
COL9A1P20849 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC7.69□□□□□ -1.18
COL9A1P20849 RPL18AP14-201ENST00000417685 526 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 RAC1P6-201ENST00000423911 575 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC7.69□□□□□ -1.18
COL9A1P20849 AC092017.2-201ENST00000427600 362 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 OR4K11P-201ENST00000431829 904 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC7.69□□□□□ -1.18
COL9A1P20849 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC7.69□□□□□ -1.18
COL9A1P20849 AL138799.3-201ENST00000438968 350 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AL353754.1-201ENST00000440219 340 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AC234771.2-201ENST00000445718 597 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC7.69□□□□□ -1.18
COL9A1P20849 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC7.69□□□□□ -1.18
COL9A1P20849 RPL23AP41-201ENST00000484754 458 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AC011005.3-201ENST00000491624 395 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC7.69□□□□□ -1.18
COL9A1P20849 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC7.69□□□□□ -1.18
COL9A1P20849 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC7.69□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms