Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.95□□□□□ -1.62
MSH3P20585 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.95□□□□□ -1.62
MSH3P20585 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.95□□□□□ -1.62
MSH3P20585 SNORA74A-201ENST00000364089 198 ntBASIC4.95□□□□□ -1.62
MSH3P20585 RNU6-609P-201ENST00000365459 107 ntBASIC4.95□□□□□ -1.62
MSH3P20585 MIR137-201ENST00000385223 102 ntBASIC4.95□□□□□ -1.62
MSH3P20585 ATP5HP3-201ENST00000396994 486 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.95□□□□□ -1.62
MSH3P20585 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.95□□□□□ -1.62
MSH3P20585 RBMY2QP-201ENST00000429799 1147 ntBASIC4.95□□□□□ -1.62
MSH3P20585 RPS26P4-201ENST00000431743 355 ntBASIC4.95□□□□□ -1.62
MSH3P20585 RPL7AP61-201ENST00000443410 636 ntBASIC4.95□□□□□ -1.62
MSH3P20585 BTF3P6-201ENST00000448054 499 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.95□□□□□ -1.62
MSH3P20585 AC078857.1-201ENST00000469870 667 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC108729.2-201ENST00000476543 840 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC093663.2-201ENST00000484625 313 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC004453.1-201ENST00000487895 408 ntBASIC4.95□□□□□ -1.62
MSH3P20585 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.95□□□□□ -1.62
MSH3P20585 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.95□□□□□ -1.62
MSH3P20585 AC010468.3-201ENST00000508225 458 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC067904.2-201ENST00000517322 1283 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC027308.1-201ENST00000517993 110 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.95□□□□□ -1.62
MSH3P20585 AC113192.3-201ENST00000529152 742 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.95□□□□□ -1.62
MSH3P20585 DUX4L52-201ENST00000549363 777 ntBASIC4.95□□□□□ -1.62
MSH3P20585 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.95□□□□□ -1.62
MSH3P20585 AP003117.1-201ENST00000602771 554 ntBASIC4.95□□□□□ -1.62
MSH3P20585 MIR7155-201ENST00000615925 56 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC025016.1-201ENST00000616746 682 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AL163051.2-201ENST00000618976 735 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AL158062.1-201ENST00000619632 745 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC068870.2-201ENST00000620635 389 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC019206.1-201ENST00000621938 425 ntBASIC4.95□□□□□ -1.62
MSH3P20585 AC010872.1-201ENST00000624225 675 ntBASIC4.95□□□□□ -1.62
MSH3P20585 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.95□□□□□ -1.62
MSH3P20585 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.95□□□□□ -1.62
MSH3P20585 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.95□□□□□ -1.62
MSH3P20585 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.94□□□□□ -1.62
MSH3P20585 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSH3P20585 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
MSH3P20585 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
MSH3P20585 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.94□□□□□ -1.62
MSH3P20585 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
MSH3P20585 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSH3P20585 AL645927.1-201ENST00000396783 406 ntBASIC4.94□□□□□ -1.62
MSH3P20585 LRRC37BP1-201ENST00000398851 714 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AP002530.1-201ENST00000405705 684 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AL355143.1-201ENST00000407101 841 ntBASIC4.94□□□□□ -1.62
MSH3P20585 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.94□□□□□ -1.62
MSH3P20585 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.94□□□□□ -1.62
MSH3P20585 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.94□□□□□ -1.62
MSH3P20585 AL121882.1-201ENST00000422893 417 ntBASIC4.94□□□□□ -1.62
MSH3P20585 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.94□□□□□ -1.62
MSH3P20585 RHOT1P3-201ENST00000436571 331 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.94□□□□□ -1.62
MSH3P20585 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.94□□□□□ -1.62
MSH3P20585 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AL691482.1-201ENST00000453255 87 ntBASIC4.94□□□□□ -1.62
MSH3P20585 EIF2S2P5-201ENST00000457635 968 ntBASIC4.94□□□□□ -1.62
MSH3P20585 RPL23AP73-201ENST00000492507 471 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AC140172.1-201ENST00000502928 141 ntBASIC4.94□□□□□ -1.62
MSH3P20585 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.94□□□□□ -1.62
MSH3P20585 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.94□□□□□ -1.62
MSH3P20585 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.94□□□□□ -1.62
MSH3P20585 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.94□□□□□ -1.62
MSH3P20585 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.94□□□□□ -1.62
MSH3P20585 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.94□□□□□ -1.62
MSH3P20585 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
MSH3P20585 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.94□□□□□ -1.62
MSH3P20585 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.94□□□□□ -1.62
MSH3P20585 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.94□□□□□ -1.62
MSH3P20585 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.94□□□□□ -1.62
MSH3P20585 RN7SL435P-201ENST00000584418 282 ntBASIC4.94□□□□□ -1.62
MSH3P20585 ZNF92P2-201ENST00000600543 1059 ntBASIC4.94□□□□□ -1.62
MSH3P20585 ABI1P1-201ENST00000603375 1120 ntBASIC4.94□□□□□ -1.62
MSH3P20585 BNIP3P31-201ENST00000604515 566 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AC005377.1-201ENST00000605126 456 ntBASIC4.94□□□□□ -1.62
MSH3P20585 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.94□□□□□ -1.62
MSH3P20585 AL391834.1-201ENST00000609609 560 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AC015922.4-201ENST00000612568 690 ntBASIC4.94□□□□□ -1.62
MSH3P20585 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
MSH3P20585 AC015914.2-201ENST00000618167 288 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AC091905.4-201ENST00000623432 202 ntBASIC4.94□□□□□ -1.62
MSH3P20585 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
MSH3P20585 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
MSH3P20585 ECM1P2-201ENST00000503354 1577 ntBASIC4.94□□□□□ -1.62
MSH3P20585 AP001642.1-201ENST00000624727 2117 ntBASIC4.94□□□□□ -1.62
MSH3P20585 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
MSH3P20585 ZNF652P1-201ENST00000442420 1309 ntBASIC4.94□□□□□ -1.62
MSH3P20585 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
MSH3P20585 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms