Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.59□□□□□ -1.67
LMX1BO60663 AC074101.1-201ENST00000637861 241 ntBASIC4.59□□□□□ -1.67
LMX1BO60663 AC132825.7-201ENST00000638744 335 ntBASIC4.59□□□□□ -1.67
LMX1BO60663 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
LMX1BO60663 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
LMX1BO60663 AC112255.1-201ENST00000624070 2493 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AC011755.1-201ENST00000623763 2049 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.58□□□□□ -1.68
LMX1BO60663 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 AC023421.1-201ENST00000590535 1785 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
LMX1BO60663 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 MFSD8-220ENST00000641243 1422 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
LMX1BO60663 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
LMX1BO60663 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 RNA5SP335-201ENST00000363817 110 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 SNORA67-201ENST00000384423 137 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 MIR589-201ENST00000385238 99 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 ZNF602P-201ENST00000405929 924 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AL355615.1-201ENST00000406187 641 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.58□□□□□ -1.68
LMX1BO60663 AL158825.1-201ENST00000414735 521 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 HMGN2P27-201ENST00000427352 270 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 RPL12P28-201ENST00000430852 489 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 PTP4A1P3-201ENST00000433661 420 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.58□□□□□ -1.68
LMX1BO60663 AC006466.1-201ENST00000438721 289 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 MTCYBP31-201ENST00000438855 1122 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.58□□□□□ -1.68
LMX1BO60663 AC105399.1-202ENST00000447303 205 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 HMGB1P26-201ENST00000452520 628 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.58□□□□□ -1.68
LMX1BO60663 RPL35AP28-201ENST00000459730 331 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AC021660.1-201ENST00000465006 554 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AC109462.1-201ENST00000491087 368 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AL049874.2-201ENST00000492636 288 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC4.58□□□□□ -1.68
LMX1BO60663 HMGB1P44-201ENST00000508597 572 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.58□□□□□ -1.68
LMX1BO60663 HPRT1P1-201ENST00000509498 657 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 BLZF2P-201ENST00000553776 1130 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.58□□□□□ -1.68
LMX1BO60663 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC4.58□□□□□ -1.68
LMX1BO60663 AC127024.5-201ENST00000580085 462 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
LMX1BO60663 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.58□□□□□ -1.68
LMX1BO60663 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
LMX1BO60663 AL162431.4-201ENST00000604674 411 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AC015849.2-201ENST00000605738 409 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 AC133644.2-201ENST00000608142 540 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 RNU6-1192P-201ENST00000612197 107 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 RNU6-489P-201ENST00000618289 107 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.58□□□□□ -1.68
LMX1BO60663 OR5AC4P-202ENST00000642086 985 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
LMX1BO60663 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 AP005432.1-201ENST00000580891 3485 ntBASIC4.58□□□□□ -1.68
LMX1BO60663 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
LMX1BO60663 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.58□□□□□ -1.68
LMX1BO60663 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.58□□□□□ -1.68
LMX1BO60663 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LMX1BO60663 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.58□□□□□ -1.68
LMX1BO60663 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.58□□□□□ -1.68
LMX1BO60663 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
LMX1BO60663 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LMX1BO60663 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LMX1BO60663 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
LMX1BO60663 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
LMX1BO60663 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
LMX1BO60663 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
LMX1BO60663 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
LMX1BO60663 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.57□□□□□ -1.68
LMX1BO60663 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LMX1BO60663 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
LMX1BO60663 HSPA8P18-201ENST00000439846 1928 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LMX1BO60663 SSX3-202ENST00000376893 800 ntTSL 2 BASIC4.57□□□□□ -1.68
LMX1BO60663 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.57□□□□□ -1.68
LMX1BO60663 RNU6-207P-201ENST00000384137 107 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.57□□□□□ -1.68
LMX1BO60663 AC107081.1-201ENST00000414975 361 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 RAB9AP4-201ENST00000415230 609 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 HIGD1AP15-201ENST00000416198 280 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.57□□□□□ -1.68
LMX1BO60663 PTP4A1P7-201ENST00000423476 514 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 AC108075.1-201ENST00000424692 529 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 FABP7P2-201ENST00000429946 379 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.57□□□□□ -1.68
LMX1BO60663 BX119904.1-201ENST00000432026 348 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 AC007563.3-201ENST00000433233 371 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 RPL7P34-201ENST00000433316 712 ntBASIC4.57□□□□□ -1.68
LMX1BO60663 RPS7P2-201ENST00000435134 607 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms