Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HNRNPA1P29-201ENST00000426409 879 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 SNRPFP2-201ENST00000440710 251 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 AC114755.5-201ENST00000447760 831 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 RNU6ATAC28P-201ENST00000459249 118 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 AC007016.1-201ENST00000512110 244 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 AC006130.2-201ENST00000586202 326 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 AC107308.1-201ENST00000615897 301 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 LDHA-225ENST00000625635 141 ntTSL 5 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 AC092451.3-201ENST00000625067 1343 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 SCARNA15-201ENST00000607520 4325 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 AC109446.4-201ENST00000623235 2755 ntBASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC9.09□□□□□ -0.95
SHROOM4Q9ULL8 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 PPIAP31-201ENST00000405422 495 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 GLUD1P9-201ENST00000420997 1173 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 MTCO1P57-201ENST00000432182 261 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 FHP1-201ENST00000442741 703 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC004980.3-201ENST00000447046 365 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 OR52E3P-201ENST00000452083 936 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 RNU6-319P-201ENST00000516025 108 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 OR7E10P-201ENST00000526420 991 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC116553.2-201ENST00000564203 463 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 MIR3138-201ENST00000585238 82 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC120338.1-201ENST00000625074 1541 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC073342.2-201ENST00000595842 1800 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 MED23-203ENST00000368058 4576 ntTSL 5 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 RNU6-670P-201ENST00000364312 104 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 SLC4A1APP1-201ENST00000419995 602 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 RAB28P3-201ENST00000448325 597 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 IGKV2-23-201ENST00000518729 323 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 HMGN2P47-201ENST00000559378 272 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC027281.1-201ENST00000574178 758 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 OR8G7P-201ENST00000616658 848 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 MIR492-201ENST00000638676 116 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC011447.7-201ENST00000624228 1590 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AC017104.4-201ENST00000636283 1592 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 AL442639.1-201ENST00000625030 1899 ntBASIC9.08□□□□□ -0.96
SHROOM4Q9ULL8 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 RBPJP2-201ENST00000618187 1444 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 ADAM24P-201ENST00000398655 2101 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AC002525.1-201ENST00000624392 1622 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 MIR7-1-201ENST00000384871 110 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AC025750.1-201ENST00000399891 379 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 FPGT-203ENST00000467578 601 ntTSL 2 BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 RPL5P12-201ENST00000477071 851 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AC023424.1-201ENST00000496058 459 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AC073358.1-201ENST00000505671 684 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AC008833.1-201ENST00000611633 691 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 OR10AB1P-202ENST00000641219 1686 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 AL122126.1-201ENST00000546905 1318 ntBASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
SHROOM4Q9ULL8 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms