Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC008694.2-201ENST00000517591 306 ntBASIC4.91□□□□□ -1.62
CCDC42Q96M95 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 AP005119.2-201ENST00000579735 1105 ntBASIC4.91□□□□□ -1.62
CCDC42Q96M95 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 AP002360.3-201ENST00000607673 710 ntBASIC4.91□□□□□ -1.62
CCDC42Q96M95 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 MIR7154-201ENST00000620673 73 ntBASIC4.91□□□□□ -1.62
CCDC42Q96M95 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CCDC42Q96M95 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 NXPH1-205ENST00000602349 1953 ntBASIC4.91□□□□□ -1.62
CCDC42Q96M95 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC42Q96M95 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC42Q96M95 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
CCDC42Q96M95 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC42Q96M95 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.9□□□□□ -1.62
CCDC42Q96M95 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
CCDC42Q96M95 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 RNU1-108P-201ENST00000362556 161 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 RNA5SP123-201ENST00000363244 119 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 RNA5SP435-201ENST00000364044 108 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 RNU1-63P-201ENST00000383902 164 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC234781.4-201ENST00000419384 244 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC062016.2-201ENST00000420950 676 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 NRBF2P3-201ENST00000432731 865 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC104763.1-201ENST00000475274 360 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 AL121834.1-201ENST00000572284 509 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 BNIP3P32-201ENST00000600015 554 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 AL137072.1-201ENST00000603444 466 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 AL138721.1-201ENST00000616756 179 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 AL669942.2-201ENST00000620352 697 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC079298.2-201ENST00000623885 459 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 MAPK10-263ENST00000641052 4307 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.9□□□□□ -1.63
CCDC42Q96M95 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
CCDC42Q96M95 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC42Q96M95 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC42Q96M95 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC42Q96M95 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC42Q96M95 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC42Q96M95 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC42Q96M95 AL078604.1-201ENST00000404609 466 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 RSU1P3-201ENST00000412878 835 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 RBMY2QP-201ENST00000429799 1147 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 RPL12P11-201ENST00000439970 501 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 RBMY2TP-201ENST00000451162 947 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 SCARNA10-201ENST00000459255 330 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 AC008953.1-201ENST00000497334 318 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 AF186190.1-201ENST00000517470 480 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 AP001880.2-201ENST00000538233 448 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 GLRXP2-201ENST00000555594 321 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 MTND6P33-201ENST00000571794 183 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 AC091046.3-201ENST00000631455 1574 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC42Q96M95 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC42Q96M95 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC42Q96M95 INTS6P1-201ENST00000504674 2530 ntBASIC4.89□□□□□ -1.63
CCDC42Q96M95 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC42Q96M95 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms