Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC018618.2-201ENST00000604770 446 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 U1.25-201ENST00000614085 162 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 U1.34-201ENST00000618578 162 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 U1.31-201ENST00000620022 160 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 AC135068.12-201ENST00000637370 931 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 ZNF849P-201ENST00000594711 1566 ntBASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 USP8-204ENST00000425032 3559 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SMC1BQ8NDV3 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 SUCLA2P2-201ENST00000417269 1309 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 MTCO1P18-201ENST00000455518 1419 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC140479.2-201ENST00000421567 3130 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 RNU6-236P-201ENST00000363886 106 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 RNU4-28P-201ENST00000364739 141 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 RNU11-201ENST00000387069 134 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AL121977.1-201ENST00000401636 979 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 HMGB1P13-201ENST00000406019 642 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC107081.1-201ENST00000414975 361 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 SETP9-201ENST00000423837 832 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 ETF1P3-201ENST00000430422 1160 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 RN7SKP21-201ENST00000516503 220 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 MTND3P13-201ENST00000574391 343 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 MIR4311-201ENST00000580794 100 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 BNIP3P24-201ENST00000593398 557 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AL360012.1-201ENST00000602813 131 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AC231759.1-201ENST00000616455 597 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 FRG1EP-201ENST00000634469 770 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 AP004607.3-201ENST00000530354 3915 ntBASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SMC1BQ8NDV3 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AL591135.1-201ENST00000401578 5914 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 RNU1-85P-201ENST00000364127 164 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 MIR130A-201ENST00000385274 89 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 GJA6P-201ENST00000415117 1042 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 DNAJA1P1-201ENST00000425106 1187 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 MGAT2P2-201ENST00000427194 797 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 MTND5P25-201ENST00000430499 799 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AL022237.1-201ENST00000446663 358 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AC092685.1-201ENST00000447960 1243 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AC092647.2-201ENST00000452998 253 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AC239798.3-201ENST00000454459 408 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 GTF2IP12-201ENST00000456547 356 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 RPL7AP28-201ENST00000464513 571 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 RPS12P31-201ENST00000491419 398 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 HMGB1P44-201ENST00000508597 572 ntBASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC6.53□□□□□ -1.36
SMC1BQ8NDV3 SCARNA16.4-201ENST00000516956 187 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms