Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC093014.1-201ENST00000548926 724 ntBASIC5.38□□□□□ -1.55
USP41Q3LFD5 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC5.38□□□□□ -1.55
USP41Q3LFD5 UBE2FP2-201ENST00000566646 462 ntBASIC5.38□□□□□ -1.55
USP41Q3LFD5 FAM106CP-201ENST00000582212 507 ntBASIC5.38□□□□□ -1.55
USP41Q3LFD5 DNAJC19P3-201ENST00000594491 331 ntBASIC5.38□□□□□ -1.55
USP41Q3LFD5 MTCO2P22-201ENST00000603246 681 ntBASIC5.38□□□□□ -1.55
USP41Q3LFD5 uc_338.18-201ENST00000615451 175 ntBASIC5.38□□□□□ -1.55
USP41Q3LFD5 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.38□□□□□ -1.55
USP41Q3LFD5 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP41Q3LFD5 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP41Q3LFD5 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
USP41Q3LFD5 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USP41Q3LFD5 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
USP41Q3LFD5 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
USP41Q3LFD5 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.38□□□□□ -1.55
USP41Q3LFD5 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
USP41Q3LFD5 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.38□□□□□ -1.55
USP41Q3LFD5 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 RPS4XP9-201ENST00000405151 780 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 FAR2P2-201ENST00000413041 594 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 COX5BP7-201ENST00000414780 274 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AF186996.5-201ENST00000418098 904 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 BTF3P9-201ENST00000418784 283 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 ARL2BPP3-201ENST00000421226 480 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC013410.2-201ENST00000422627 201 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 FAR2P4-202ENST00000425399 584 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC007559.1-201ENST00000428736 355 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC090804.1-201ENST00000448870 490 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 TCEA1P1-201ENST00000449716 880 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 BX842559.2-201ENST00000451418 605 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 EIF2S2P5-201ENST00000457635 968 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 TPT1P1-201ENST00000458495 518 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC092902.1-201ENST00000486999 259 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 MRPS33P2-201ENST00000507850 322 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC016559.2-201ENST00000510759 359 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC021193.1-201ENST00000511607 420 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC004923.2-201ENST00000529649 369 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 MIR3667-201ENST00000581025 74 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 MIR4472-2-201ENST00000582069 67 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC015849.2-201ENST00000605738 409 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 MIR1264-201ENST00000616374 69 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AL158062.1-201ENST00000619632 745 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC097460.3-201ENST00000623099 442 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 AL136520.1-201ENST00000600311 1322 ntBASIC5.37□□□□□ -1.55
USP41Q3LFD5 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
USP41Q3LFD5 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.37□□□□□ -1.55
USP41Q3LFD5 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 AL022311.1-201ENST00000623726 19416 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.36□□□□□ -1.55
USP41Q3LFD5 RNU6-609P-201ENST00000365459 107 ntBASIC5.36□□□□□ -1.55
USP41Q3LFD5 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP41Q3LFD5 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms