Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 AC093671.1-201ENST00000624981 2929 ntBASIC6.6□□□□□ -1.35
LIG3P49916 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.6□□□□□ -1.35
LIG3P49916 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
LIG3P49916 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
LIG3P49916 RPL11P4-201ENST00000332269 436 ntBASIC6.6□□□□□ -1.35
LIG3P49916 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
LIG3P49916 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 MTCO3P31-201ENST00000405526 789 ntBASIC6.6□□□□□ -1.35
LIG3P49916 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC6.6□□□□□ -1.35
LIG3P49916 RPL7AP51-201ENST00000422016 760 ntBASIC6.6□□□□□ -1.35
LIG3P49916 SLC44A3-AS1-205ENST00000424505 612 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC6.6□□□□□ -1.35
LIG3P49916 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 LARP1BP3-201ENST00000437229 869 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AC234771.2-201ENST00000445718 597 ntBASIC6.6□□□□□ -1.35
LIG3P49916 EPS15P1-201ENST00000448836 336 ntBASIC6.6□□□□□ -1.35
LIG3P49916 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC6.6□□□□□ -1.35
LIG3P49916 AL603882.1-201ENST00000463059 681 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AC010307.1-201ENST00000467206 836 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 AL035404.1-201ENST00000497982 568 ntBASIC6.6□□□□□ -1.35
LIG3P49916 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.6□□□□□ -1.35
LIG3P49916 AC109464.2-201ENST00000510242 943 ntBASIC6.6□□□□□ -1.35
LIG3P49916 TCP11X3P-202ENST00000514289 1254 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AC025881.1-201ENST00000518851 512 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AC008802.1-201ENST00000519121 791 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC6.6□□□□□ -1.35
LIG3P49916 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC6.6□□□□□ -1.35
LIG3P49916 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 CBX3P7-201ENST00000532876 502 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.6□□□□□ -1.35
LIG3P49916 PCMTD1P2-201ENST00000565017 355 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.6□□□□□ -1.35
LIG3P49916 AC069234.5-201ENST00000611056 416 ntBASIC6.6□□□□□ -1.35
LIG3P49916 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC6.6□□□□□ -1.35
LIG3P49916 U4.5-201ENST00000617137 123 ntBASIC6.6□□□□□ -1.35
LIG3P49916 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.6□□□□□ -1.35
LIG3P49916 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 OR11H2-202ENST00000641517 1085 ntBASIC6.6□□□□□ -1.35
LIG3P49916 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 AL161912.4-201ENST00000623889 2468 ntBASIC6.6□□□□□ -1.35
LIG3P49916 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.6□□□□□ -1.35
LIG3P49916 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 AP005435.3-201ENST00000531260 3198 ntBASIC6.6□□□□□ -1.35
LIG3P49916 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 AC130360.2-201ENST00000533477 1556 ntBASIC6.6□□□□□ -1.35
LIG3P49916 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.6□□□□□ -1.35
LIG3P49916 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 MTCO1P23-201ENST00000415223 1526 ntBASIC6.6□□□□□ -1.35
LIG3P49916 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
LIG3P49916 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIG3P49916 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 PDZK1P1-202ENST00000425209 1350 ntBASIC6.59□□□□□ -1.35
LIG3P49916 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
LIG3P49916 PABPC1P9-201ENST00000426076 1612 ntBASIC6.59□□□□□ -1.35
LIG3P49916 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
LIG3P49916 RPL21P132-201ENST00000331267 462 ntBASIC6.59□□□□□ -1.35
LIG3P49916 RNU5F-7P-201ENST00000363696 115 ntBASIC6.59□□□□□ -1.35
LIG3P49916 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
LIG3P49916 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.59□□□□□ -1.35
LIG3P49916 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC6.59□□□□□ -1.35
LIG3P49916 MRPS6P2-201ENST00000381143 370 ntBASIC6.59□□□□□ -1.35
LIG3P49916 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.59□□□□□ -1.35
LIG3P49916 UBTFL3-201ENST00000418934 1024 ntBASIC6.59□□□□□ -1.35
LIG3P49916 ISCA1P1-201ENST00000426679 387 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.59□□□□□ -1.35
LIG3P49916 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC6.59□□□□□ -1.35
LIG3P49916 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC6.59□□□□□ -1.35
LIG3P49916 AC069154.1-201ENST00000432914 542 ntBASIC6.59□□□□□ -1.35
LIG3P49916 UBE2FP3-201ENST00000436366 524 ntBASIC6.59□□□□□ -1.35
LIG3P49916 PCBP2P1-201ENST00000437262 977 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.59□□□□□ -1.35
LIG3P49916 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC6.59□□□□□ -1.35
LIG3P49916 AC027673.1-201ENST00000456245 405 ntBASIC6.59□□□□□ -1.35
LIG3P49916 UBTFL6-201ENST00000477929 1024 ntBASIC6.59□□□□□ -1.35
LIG3P49916 AC098818.1-201ENST00000478593 252 ntBASIC6.59□□□□□ -1.35
LIG3P49916 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC6.59□□□□□ -1.35
LIG3P49916 RPL7P38-201ENST00000488396 739 ntBASIC6.59□□□□□ -1.35
LIG3P49916 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.59□□□□□ -1.35
LIG3P49916 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC6.59□□□□□ -1.35
LIG3P49916 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.59□□□□□ -1.35
LIG3P49916 AC092709.1-201ENST00000521355 1045 ntBASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms