Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 MTND6P18-201ENST00000439477 513 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 TRY2P-201ENST00000448860 689 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 RBMY2TP-201ENST00000451162 947 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 RPL23AP56-201ENST00000460778 453 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 RPL7AP28-201ENST00000464513 571 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 RPL23AP37-201ENST00000479658 549 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC083982.1-201ENST00000485679 344 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 RPL37AP8-201ENST00000494116 276 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 RNU6-943P-201ENST00000516960 98 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 Y_RNA.719-201ENST00000517156 106 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 BRD9P1-201ENST00000529855 560 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC005084.1-201ENST00000605160 304 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC010424.2-201ENST00000607594 443 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC131238.1-201ENST00000617135 328 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC079298.2-201ENST00000623885 459 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 DDX18P3-201ENST00000404856 2007 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC027290.2-201ENST00000623210 18662 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 LINC01109-201ENST00000603837 3081 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AL359922.3-201ENST00000624779 1670 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-DMBP28068 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-DMBP28068 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC103591.2-201ENST00000265259 766 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 IL6STP1-201ENST00000346911 1020 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 RN7SKP104-201ENST00000362605 328 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 RNU1-94P-201ENST00000362627 173 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AL035419.1-201ENST00000397037 564 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AL021331.1-201ENST00000402817 582 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 ARL4AP5-201ENST00000404372 599 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 GTF2IP5-201ENST00000414608 731 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 COX6B1P1-201ENST00000415962 213 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 FABP7P1-201ENST00000424004 391 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 RPS17P8-201ENST00000434525 335 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC093414.1-201ENST00000434712 514 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AL451139.1-201ENST00000434718 346 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 ARL4AP3-201ENST00000441452 574 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC010733.1-201ENST00000451515 401 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC091685.2-201ENST00000454924 864 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 RPS3AP41-201ENST00000462701 778 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AGGF1P3-201ENST00000493675 1213 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC140172.1-201ENST00000502928 141 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AP002981.1-201ENST00000517692 975 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 MORF4L1P3-201ENST00000525966 950 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 OR5AZ1P-201ENST00000527448 943 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 MIR4700-201ENST00000578311 74 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 RN7SL176P-201ENST00000580352 264 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AP000919.1-201ENST00000582850 985 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 RPL26P30-202ENST00000602923 645 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC011453.2-201ENST00000603737 729 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 QTRT1P1-201ENST00000604344 1078 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AL158196.1-201ENST00000616786 434 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC234782.5-201ENST00000617723 324 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC067931.1-201ENST00000624190 671 ntBASIC3.62□□□□□ -1.83
HLA-DMBP28068 LDHA-225ENST00000625635 141 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
HLA-DMBP28068 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms