Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 BNIP3P35-201ENST00000604530 490 ntBASIC4.2□□□□□ -1.74
USF1P22415 AL391358.1-201ENST00000605342 190 ntBASIC4.2□□□□□ -1.74
USF1P22415 AC018695.5-201ENST00000605872 315 ntBASIC4.2□□□□□ -1.74
USF1P22415 AL023583.1-201ENST00000607518 1143 ntBASIC4.2□□□□□ -1.74
USF1P22415 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 AC004241.3-201ENST00000611728 517 ntBASIC4.2□□□□□ -1.74
USF1P22415 NF1P10-201ENST00000613227 742 ntBASIC4.2□□□□□ -1.74
USF1P22415 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.2□□□□□ -1.74
USF1P22415 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
USF1P22415 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
USF1P22415 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 AC010300.1-201ENST00000600671 5134 ntBASIC4.2□□□□□ -1.74
USF1P22415 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USF1P22415 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.2□□□□□ -1.74
USF1P22415 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
USF1P22415 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
USF1P22415 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
USF1P22415 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
USF1P22415 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
USF1P22415 AC079741.1-201ENST00000321498 212 ntBASIC4.19□□□□□ -1.74
USF1P22415 RNU1-32P-201ENST00000363937 159 ntBASIC4.19□□□□□ -1.74
USF1P22415 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 MIR298-201ENST00000401212 88 ntBASIC4.19□□□□□ -1.74
USF1P22415 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 AF186996.5-201ENST00000418098 904 ntBASIC4.19□□□□□ -1.74
USF1P22415 AC013470.3-201ENST00000420252 1194 ntBASIC4.19□□□□□ -1.74
USF1P22415 EIF2S2P3-201ENST00000428356 999 ntBASIC4.19□□□□□ -1.74
USF1P22415 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.19□□□□□ -1.74
USF1P22415 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 GTF3AP5-201ENST00000442645 697 ntBASIC4.19□□□□□ -1.74
USF1P22415 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 AL513533.1-201ENST00000453728 415 ntBASIC4.19□□□□□ -1.74
USF1P22415 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.19□□□□□ -1.74
USF1P22415 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.19□□□□□ -1.74
USF1P22415 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 NIP7P2-201ENST00000485801 544 ntBASIC4.19□□□□□ -1.74
USF1P22415 IGLV2-34-201ENST00000490007 283 ntBASIC4.19□□□□□ -1.74
USF1P22415 RPL23AP72-201ENST00000492447 435 ntBASIC4.19□□□□□ -1.74
USF1P22415 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.19□□□□□ -1.74
USF1P22415 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
USF1P22415 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.19□□□□□ -1.74
USF1P22415 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.19□□□□□ -1.74
USF1P22415 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.19□□□□□ -1.74
USF1P22415 HMGB1P19-201ENST00000517578 577 ntBASIC4.19□□□□□ -1.74
USF1P22415 AC025857.1-201ENST00000525252 377 ntBASIC4.19□□□□□ -1.74
USF1P22415 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.19□□□□□ -1.74
USF1P22415 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.19□□□□□ -1.74
USF1P22415 FAM106CP-201ENST00000582212 507 ntBASIC4.19□□□□□ -1.74
USF1P22415 EIF1P5-201ENST00000585002 234 ntBASIC4.19□□□□□ -1.74
USF1P22415 AC096553.1-201ENST00000605169 829 ntBASIC4.19□□□□□ -1.74
USF1P22415 AC012557.1-201ENST00000607115 611 ntBASIC4.19□□□□□ -1.74
USF1P22415 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.19□□□□□ -1.74
USF1P22415 AP000648.2-201ENST00000624182 404 ntBASIC4.19□□□□□ -1.74
USF1P22415 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
USF1P22415 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.19□□□□□ -1.74
USF1P22415 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 SAMMSON-226ENST00000642089 1582 ntBASIC4.19□□□□□ -1.74
USF1P22415 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
USF1P22415 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
USF1P22415 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.18□□□□□ -1.74
USF1P22415 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.18□□□□□ -1.74
USF1P22415 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USF1P22415 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USF1P22415 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
USF1P22415 VPS35P1-201ENST00000563400 1518 ntBASIC4.18□□□□□ -1.74
USF1P22415 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USF1P22415 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
USF1P22415 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USF1P22415 AL390316.1-201ENST00000406279 553 ntBASIC4.18□□□□□ -1.74
USF1P22415 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.18□□□□□ -1.74
USF1P22415 COX6CP17-201ENST00000421389 185 ntBASIC4.18□□□□□ -1.74
USF1P22415 C4BPAP2-201ENST00000428434 478 ntBASIC4.18□□□□□ -1.74
USF1P22415 AC068287.1-201ENST00000430283 295 ntBASIC4.18□□□□□ -1.74
USF1P22415 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.18□□□□□ -1.74
USF1P22415 TPT1P12-201ENST00000448968 492 ntBASIC4.18□□□□□ -1.74
USF1P22415 SLC25A18P1-201ENST00000449385 454 ntBASIC4.18□□□□□ -1.74
USF1P22415 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.18□□□□□ -1.74
USF1P22415 AC091180.1-201ENST00000462104 372 ntBASIC4.18□□□□□ -1.74
USF1P22415 FTH1P2-201ENST00000466086 412 ntBASIC4.18□□□□□ -1.74
USF1P22415 RN7SL354P-201ENST00000469282 294 ntBASIC4.18□□□□□ -1.74
USF1P22415 AC096741.1-201ENST00000472250 846 ntBASIC4.18□□□□□ -1.74
USF1P22415 AC105918.1-201ENST00000474399 838 ntBASIC4.18□□□□□ -1.74
USF1P22415 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.18□□□□□ -1.74
USF1P22415 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.18□□□□□ -1.74
USF1P22415 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.18□□□□□ -1.74
USF1P22415 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms