Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 NANOGP6-201ENST00000429190 847 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 FAM96AP1-201ENST00000430879 482 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 MTCO1P45-201ENST00000431457 267 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC012075.1-201ENST00000436549 580 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 PRPF38AP2-201ENST00000438179 851 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 CCRL1P1-201ENST00000449542 1053 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AL451050.1-201ENST00000450126 415 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RANP1-206ENST00000455094 651 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RPL35AP19-201ENST00000469425 329 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RN7SL174P-201ENST00000475578 289 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RN7SL547P-201ENST00000490793 290 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 IGLVIV-64-201ENST00000518581 301 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC012339.2-201ENST00000523996 453 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 MIR3614-201ENST00000581261 86 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC020915.5-201ENST00000596836 964 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AL139395.1-201ENST00000603662 160 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC005377.1-201ENST00000605126 456 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC007620.3-201ENST00000608131 497 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC079395.2-201ENST00000610982 737 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RNA5SP440-201ENST00000612665 119 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 SNORA11.6-201ENST00000619030 128 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AL133370.2-201ENST00000619934 439 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RMST_9.1-201ENST00000619945 193 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC103858.2-201ENST00000621471 543 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC105105.5-201ENST00000622635 1294 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AL049767.1-202ENST00000637826 242 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 RNA5SP234-201ENST00000363916 119 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 SNORA70.10-201ENST00000384515 134 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC104297.1-201ENST00000393779 870 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 OR4K12P-201ENST00000406538 961 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 MTCYBP7-201ENST00000419540 1134 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AL133325.1-201ENST00000421090 382 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 BX119904.1-201ENST00000432026 348 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 HMGB3P10-201ENST00000434734 572 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 RPL7P33-201ENST00000444159 742 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 CCDC75P1-201ENST00000469247 791 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 RPL23AP2-201ENST00000471227 466 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC037198.2-201ENST00000478845 733 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC026688.1-201ENST00000520639 1168 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 IFITM8P-201ENST00000522529 394 ntBASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
HLA-DQA1P01909 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms