Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RNU6-470P-201ENST00000515954 104 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 RNU6-256P-201ENST00000516747 97 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 RN7SKP219-201ENST00000516825 296 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 TMEM132D-AS1-204ENST00000537367 531 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 COX4I1P1-201ENST00000554239 509 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 UBE2CP1-201ENST00000557130 554 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AP005210.1-201ENST00000583659 544 ntTSL 2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC093484.4-201ENST00000583934 461 ntTSL 5 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 MIR3672-201ENST00000584290 82 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 DTNA-220ENST00000590831 847 ntTSL 2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 WDR75-207ENST00000631047 270 ntTSL 5 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 SPRR5-201ENST00000636302 817 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC087885.1-201ENST00000641910 848 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 CD40LG-201ENST00000370628 1720 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC016831.3-201ENST00000446451 1723 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC011416.1-201ENST00000514947 1732 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 SLC17A3-203ENST00000361703 1543 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 PIWIL2-205ENST00000611073 2864 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 ARMC3-203ENST00000409049 2479 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 OR4Q2-201ENST00000541415 2778 ntAPPRIS P5 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 LINC02203-204ENST00000628444 2323 ntTSL 2 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 ARPP21-207ENST00000417925 3086 ntTSL 2 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 NUCB2-201ENST00000323688 1905 ntAPPRIS ALT1 TSL 2 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 MTRF1-203ENST00000379480 2185 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 LINC01142-201ENST00000440404 1457 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 LINC01924-201ENST00000589376 1722 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 MMP20-201ENST00000260228 1956 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 PABPC5-201ENST00000312600 3221 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 CYFIP2-210ENST00000522463 3477 ntTSL 2 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 DNAI1-201ENST00000242317 2504 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 RNA5SP263-201ENST00000363376 128 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 MIR106B-201ENST00000385301 82 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 IGKV3-15-201ENST00000390252 442 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 RNU6-328P-201ENST00000390887 106 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC078974.1-201ENST00000411597 223 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AL022100.1-202ENST00000421214 548 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 FTH1P5-201ENST00000425761 545 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 CICP10-201ENST00000439497 198 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 UBE2V1P5-201ENST00000440070 405 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 C15orf40-202ENST00000451195 518 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 PTMAP1-205ENST00000455552 325 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AL590490.1-201ENST00000455599 316 ntTSL 5 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 HNRNPDLP3-201ENST00000456745 380 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AP1S2P1-201ENST00000457344 379 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 RN7SL368P-201ENST00000473384 277 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 PRICKLE2-AS2-201ENST00000484703 496 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 LINC02024-203ENST00000496994 489 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC131392.1-201ENST00000506490 633 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC138866.2-201ENST00000508650 584 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 GUSBP9-201ENST00000510138 584 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 SNORD27.1-201ENST00000516319 72 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 SCARNA20.3-201ENST00000516913 131 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC084026.2-201ENST00000521101 642 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 TBCA-209ENST00000522370 435 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC022639.1-201ENST00000523191 573 ntTSL 4 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC092818.1-201ENST00000523411 639 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 HNRNPCP8-201ENST00000528764 888 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 HMGB3P26-201ENST00000560051 582 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC008870.2-201ENST00000568262 1024 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC133565.1-201ENST00000569218 488 ntTSL 3 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC009779.6-201ENST00000603972 165 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AP001521.1-201ENST00000609150 300 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC244196.3-201ENST00000614171 374 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 NR1I3-235ENST00000628566 1201 ntTSL 5 BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 AC008013.2-202ENST00000637965 364 ntBASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC7.7□□□□□ -1.18
VPS9D1Q9Y2B5 ZNF611-202ENST00000453741 4380 ntTSL 4 BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms