Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AL590762.2-201ENST00000395798 571 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 RPL7P57-201ENST00000423238 740 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 HMGN2P27-201ENST00000427352 270 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AP000859.1-201ENST00000525536 307 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 OR5M2P-201ENST00000529003 936 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC087477.6-201ENST00000559595 843 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC068790.7-201ENST00000602347 528 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 MIR7703-201ENST00000620784 77 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC104820.1-201ENST00000624183 307 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 RNU6-152P-201ENST00000384037 107 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AL512504.1-201ENST00000415494 778 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC019050.1-201ENST00000418508 492 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 GTF3AP5-201ENST00000442645 697 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 MORF4L1P4-201ENST00000450245 976 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC006967.1-201ENST00000467608 589 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 PCNAP1-201ENST00000505363 709 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 IGKV1-32-201ENST00000519290 311 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC122134.1-201ENST00000565664 1104 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 SNX6P1-201ENST00000601728 1224 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 BMS1P7-201ENST00000602440 1052 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AL161616.1-201ENST00000611867 286 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC020763.5-201ENST00000623298 430 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 AL121950.1-201ENST00000624993 2077 ntBASIC4.8□□□□□ -1.64
LHX3Q9UBR4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LHX3Q9UBR4 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 RNU4-7P-201ENST00000364758 141 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AL591848.1-201ENST00000413092 322 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC016831.4-201ENST00000438302 307 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC069277.2-201ENST00000454211 432 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 EIF2S2P4-201ENST00000461070 984 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 RPL12P20-201ENST00000475538 479 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 NPM1P28-201ENST00000492269 840 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC092868.3-201ENST00000560515 784 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC073091.2-201ENST00000603205 907 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC073111.2-201ENST00000605657 1075 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 BX322635.1-201ENST00000605804 496 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC019131.2-201ENST00000609071 870 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 MIR6780A-201ENST00000615089 68 ntBASIC4.79□□□□□ -1.64
LHX3Q9UBR4 AC015804.1-201ENST00000622935 435 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms