Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AC096644.3-201ENST00000416788 338 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AJ239321.1-201ENST00000424255 564 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 NDUFA5P1-201ENST00000433858 341 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AL451139.1-201ENST00000434718 346 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 HMGN1P2-201ENST00000445197 310 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AC000111.2-201ENST00000448200 210 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 OR52E7P-201ENST00000452394 933 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 SCARNA10-201ENST00000459255 330 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 RN7SL168P-201ENST00000463821 279 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 COL6A4P2-205ENST00000509855 506 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 NPM1P52-201ENST00000518264 846 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AC130352.1-201ENST00000602979 661 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AC105254.2-201ENST00000603636 436 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AL139395.1-201ENST00000603662 160 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AL359513.1-201ENST00000614364 557 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AL356121.2-201ENST00000624715 780 ntBASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
CCDC28BQ9BUN5 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 SMG1P6-201ENST00000532337 2930 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 RNU6-386P-201ENST00000362650 107 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 SNORA17.1-201ENST00000362945 126 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AL021331.1-201ENST00000402817 582 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AL512504.1-201ENST00000415494 778 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC106901.1-201ENST00000425086 698 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 SKP1P3-201ENST00000429280 487 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 CCDC75P1-201ENST00000469247 791 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 EIF4E2P2-201ENST00000492033 736 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 RPS6P4-201ENST00000494693 758 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 VWA8P1-201ENST00000510889 176 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 RN7SKP260-201ENST00000516907 149 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 MIR744-201ENST00000578242 98 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AL499605.1-201ENST00000604628 403 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 MIR6780B-201ENST00000610307 79 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC007204.2-201ENST00000615022 616 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AC009032.1-201ENST00000617574 431 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 MIR4727-201ENST00000622232 55 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AP003499.2-201ENST00000624100 483 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 HPVC1-201ENST00000629899 1198 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 AL133243.3-201ENST00000617415 3004 ntBASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC28BQ9BUN5 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 AL121950.1-201ENST00000624993 2077 ntBASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC28BQ9BUN5 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms