Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
HSPG2P98160 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC2.75□□□□□ -1.97
HSPG2P98160 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
HSPG2P98160 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC2.75□□□□□ -1.97
HSPG2P98160 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HSPG2P98160 CA5A-201ENST00000309893 7567 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HSPG2P98160 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HSPG2P98160 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
HSPG2P98160 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HSPG2P98160 AC115115.1-201ENST00000449927 248 ntBASIC2.75□□□□□ -1.97
HSPG2P98160 CAB39P1-201ENST00000502277 460 ntBASIC2.75□□□□□ -1.97
HSPG2P98160 KCTD9P2-201ENST00000512203 1013 ntBASIC2.75□□□□□ -1.97
HSPG2P98160 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC2.75□□□□□ -1.97
HSPG2P98160 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HSPG2P98160 MIR5195-201ENST00000583555 115 ntBASIC2.75□□□□□ -1.97
HSPG2P98160 AC025857.2-201ENST00000602711 238 ntBASIC2.75□□□□□ -1.97
HSPG2P98160 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 USP45-204ENST00000369233 2514 ntTSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC2.74□□□□□ -1.97
HSPG2P98160 RNA5SP72-201ENST00000364442 117 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 MIR1289-1-201ENST00000408836 144 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AC096664.2-201ENST00000411843 406 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.74□□□□□ -1.97
HSPG2P98160 AC104849.1-201ENST00000462623 405 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 GAPDHP36-201ENST00000480688 918 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AC025164.1-201ENST00000496249 478 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC2.74□□□□□ -1.97
HSPG2P98160 AC092709.1-201ENST00000521355 1045 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 MIR5685-201ENST00000579080 79 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AL031985.2-201ENST00000600955 480 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 SRGNP1-201ENST00000603392 451 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AL445363.3-201ENST00000623080 671 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AC005618.4-201ENST00000625053 554 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
HSPG2P98160 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
HSPG2P98160 ATP5F1P4-201ENST00000397288 746 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AL590704.1-201ENST00000402856 794 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 MTND6P5-201ENST00000448266 512 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AC074250.1-201ENST00000511117 192 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 HMGN1P15-201ENST00000513870 295 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AC097486.1-201ENST00000515331 210 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC2.74□□□□□ -1.97
HSPG2P98160 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 AC093388.1-201ENST00000609166 430 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AC007786.3-201ENST00000615154 596 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
HSPG2P98160 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC2.74□□□□□ -1.97
HSPG2P98160 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC2.74□□□□□ -1.97
HSPG2P98160 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC2.74□□□□□ -1.97
HSPG2P98160 RPL7P4-203ENST00000430239 730 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC2.74□□□□□ -1.97
HSPG2P98160 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC2.74□□□□□ -1.97
HSPG2P98160 IFITM8P-201ENST00000522529 394 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC2.74□□□□□ -1.97
HSPG2P98160 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC2.74□□□□□ -1.97
HSPG2P98160 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC2.74□□□□□ -1.97
HSPG2P98160 uc_338.13-201ENST00000618243 179 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC2.74□□□□□ -1.97
HSPG2P98160 AC024560.2-201ENST00000507981 1497 ntBASIC2.74□□□□□ -1.97
HSPG2P98160 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HSPG2P98160 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC2.74□□□□□ -1.97
HSPG2P98160 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC2.73□□□□□ -1.97
HSPG2P98160 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
HSPG2P98160 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
HSPG2P98160 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HSPG2P98160 RPL21P17-201ENST00000397467 475 ntBASIC2.73□□□□□ -1.97
HSPG2P98160 ACTR3P3-201ENST00000480448 893 ntBASIC2.73□□□□□ -1.97
HSPG2P98160 AC104164.2-201ENST00000496953 495 ntBASIC2.73□□□□□ -1.97
HSPG2P98160 AC010653.1-201ENST00000571108 881 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms