Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AK4P6-201ENST00000505168 528 ntBASIC4.51□□□□□ -1.69
LIM2P55344 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.51□□□□□ -1.69
LIM2P55344 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.51□□□□□ -1.69
LIM2P55344 RN7SKP46-201ENST00000515942 234 ntBASIC4.51□□□□□ -1.69
LIM2P55344 SNORA48.9-201ENST00000516419 162 ntBASIC4.51□□□□□ -1.69
LIM2P55344 FKBP1BP1-201ENST00000553366 325 ntBASIC4.51□□□□□ -1.69
LIM2P55344 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.51□□□□□ -1.69
LIM2P55344 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.51□□□□□ -1.69
LIM2P55344 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
LIM2P55344 AC007448.1-201ENST00000582714 234 ntBASIC4.51□□□□□ -1.69
LIM2P55344 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.51□□□□□ -1.69
LIM2P55344 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.51□□□□□ -1.69
LIM2P55344 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.51□□□□□ -1.69
LIM2P55344 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC4.51□□□□□ -1.69
LIM2P55344 AL512782.1-201ENST00000603093 364 ntBASIC4.51□□□□□ -1.69
LIM2P55344 AL391358.1-201ENST00000605342 190 ntBASIC4.51□□□□□ -1.69
LIM2P55344 AC024940.4-201ENST00000605507 246 ntBASIC4.51□□□□□ -1.69
LIM2P55344 FAM25E-202ENST00000608562 189 ntBASIC4.51□□□□□ -1.69
LIM2P55344 AL159169.2-201ENST00000610061 1269 ntBASIC4.51□□□□□ -1.69
LIM2P55344 AC015922.4-201ENST00000612568 690 ntBASIC4.51□□□□□ -1.69
LIM2P55344 AF117829.2-201ENST00000619538 361 ntBASIC4.51□□□□□ -1.69
LIM2P55344 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
LIM2P55344 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.51□□□□□ -1.69
LIM2P55344 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LIM2P55344 AL672167.1-203ENST00000641299 2975 ntBASIC4.51□□□□□ -1.69
LIM2P55344 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
LIM2P55344 AC007382.1-201ENST00000624376 2618 ntBASIC4.51□□□□□ -1.69
LIM2P55344 AC104260.2-201ENST00000623551 3497 ntBASIC4.51□□□□□ -1.69
LIM2P55344 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.51□□□□□ -1.69
LIM2P55344 AC107068.1-201ENST00000563286 4218 ntBASIC4.51□□□□□ -1.69
LIM2P55344 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.5□□□□□ -1.69
LIM2P55344 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIM2P55344 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
LIM2P55344 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIM2P55344 AL442639.1-201ENST00000625030 1899 ntBASIC4.5□□□□□ -1.69
LIM2P55344 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.5□□□□□ -1.69
LIM2P55344 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
LIM2P55344 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIM2P55344 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LIM2P55344 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIM2P55344 AL672167.2-201ENST00000377164 879 ntBASIC4.5□□□□□ -1.69
LIM2P55344 RNU1-82P-201ENST00000390851 165 ntBASIC4.5□□□□□ -1.69
LIM2P55344 RN7SKP100-201ENST00000411258 284 ntBASIC4.5□□□□□ -1.69
LIM2P55344 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.5□□□□□ -1.69
LIM2P55344 AC007064.3-201ENST00000422608 359 ntBASIC4.5□□□□□ -1.69
LIM2P55344 AC106901.1-201ENST00000425086 698 ntBASIC4.5□□□□□ -1.69
LIM2P55344 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.5□□□□□ -1.69
LIM2P55344 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.5□□□□□ -1.69
LIM2P55344 HMGB3P10-201ENST00000434734 572 ntBASIC4.5□□□□□ -1.69
LIM2P55344 ARAFP2-201ENST00000440565 559 ntBASIC4.5□□□□□ -1.69
LIM2P55344 RPL31P20-201ENST00000449593 360 ntBASIC4.5□□□□□ -1.69
LIM2P55344 RPS4XP12-201ENST00000461747 709 ntBASIC4.5□□□□□ -1.69
LIM2P55344 AC083982.1-201ENST00000485679 344 ntBASIC4.5□□□□□ -1.69
LIM2P55344 OR11I1P-201ENST00000486033 954 ntBASIC4.5□□□□□ -1.69
LIM2P55344 ASNSP4-201ENST00000511103 447 ntBASIC4.5□□□□□ -1.69
LIM2P55344 RN7SKP276-201ENST00000516242 268 ntBASIC4.5□□□□□ -1.69
LIM2P55344 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC4.5□□□□□ -1.69
LIM2P55344 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
LIM2P55344 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.5□□□□□ -1.69
LIM2P55344 UBE2FP2-201ENST00000566646 462 ntBASIC4.5□□□□□ -1.69
LIM2P55344 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.5□□□□□ -1.69
LIM2P55344 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.5□□□□□ -1.69
LIM2P55344 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
LIM2P55344 AL049539.1-201ENST00000611964 459 ntBASIC4.5□□□□□ -1.69
LIM2P55344 AC020658.4-201ENST00000613987 684 ntBASIC4.5□□□□□ -1.69
LIM2P55344 AC015804.1-201ENST00000622935 435 ntBASIC4.5□□□□□ -1.69
LIM2P55344 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LIM2P55344 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC4.5□□□□□ -1.69
LIM2P55344 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
LIM2P55344 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
LIM2P55344 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.49□□□□□ -1.69
LIM2P55344 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.49□□□□□ -1.69
LIM2P55344 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.49□□□□□ -1.69
LIM2P55344 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 AL121950.1-201ENST00000624993 2077 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AL356317.1-201ENST00000396110 1436 ntBASIC4.49□□□□□ -1.69
LIM2P55344 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
LIM2P55344 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
LIM2P55344 AL359922.3-201ENST00000624779 1670 ntBASIC4.49□□□□□ -1.69
LIM2P55344 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
LIM2P55344 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 RNA5SP87-201ENST00000384155 118 ntBASIC4.49□□□□□ -1.69
LIM2P55344 MIR137-201ENST00000385223 102 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AL133270.1-201ENST00000402635 279 ntBASIC4.49□□□□□ -1.69
LIM2P55344 ARL4AP5-201ENST00000404372 599 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.49□□□□□ -1.69
LIM2P55344 RSU1P3-201ENST00000412878 835 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AL512504.1-201ENST00000415494 778 ntBASIC4.49□□□□□ -1.69
LIM2P55344 DPPA2P2-201ENST00000418220 897 ntBASIC4.49□□□□□ -1.69
LIM2P55344 GLUD1P9-201ENST00000420997 1173 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AC012519.1-201ENST00000424588 610 ntBASIC4.49□□□□□ -1.69
LIM2P55344 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.49□□□□□ -1.69
LIM2P55344 ARL5AP3-201ENST00000439327 386 ntBASIC4.49□□□□□ -1.69
LIM2P55344 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms