Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 AL591135.1-201ENST00000401578 5914 ntBASIC5.87□□□□□ -1.47
COL18A1P39060 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
COL18A1P39060 SNORA11C-201ENST00000408532 129 ntBASIC5.87□□□□□ -1.47
COL18A1P39060 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.87□□□□□ -1.47
COL18A1P39060 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.87□□□□□ -1.47
COL18A1P39060 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.87□□□□□ -1.47
COL18A1P39060 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.87□□□□□ -1.47
COL18A1P39060 AC020890.1-201ENST00000491837 504 ntBASIC5.87□□□□□ -1.47
COL18A1P39060 AC105233.3-201ENST00000531125 744 ntBASIC5.87□□□□□ -1.47
COL18A1P39060 HNRNPCP4-201ENST00000571636 900 ntBASIC5.87□□□□□ -1.47
COL18A1P39060 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.87□□□□□ -1.47
COL18A1P39060 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.87□□□□□ -1.47
COL18A1P39060 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.87□□□□□ -1.47
COL18A1P39060 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 AC239868.2-201ENST00000564237 4527 ntBASIC5.87□□□□□ -1.47
COL18A1P39060 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.87□□□□□ -1.47
COL18A1P39060 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.87□□□□□ -1.47
COL18A1P39060 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
COL18A1P39060 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC5.86□□□□□ -1.47
COL18A1P39060 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
COL18A1P39060 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.86□□□□□ -1.47
COL18A1P39060 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.86□□□□□ -1.47
COL18A1P39060 RPL21P91-201ENST00000429231 479 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.86□□□□□ -1.47
COL18A1P39060 VN1R34P-201ENST00000447387 883 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.86□□□□□ -1.47
COL18A1P39060 RPS27AP17-201ENST00000463344 455 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 AC090686.1-201ENST00000481577 749 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.86□□□□□ -1.47
COL18A1P39060 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 AC087477.6-201ENST00000559595 843 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.86□□□□□ -1.47
COL18A1P39060 AL161729.3-201ENST00000603533 673 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 RNA5SP439-201ENST00000617595 124 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 FRG1EP-201ENST00000634469 770 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 AC105074.1-201ENST00000623380 3095 ntBASIC5.86□□□□□ -1.47
COL18A1P39060 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
COL18A1P39060 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
COL18A1P39060 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
COL18A1P39060 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL18A1P39060 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.85□□□□□ -1.47
COL18A1P39060 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL18A1P39060 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 RNU1-63P-201ENST00000383902 164 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 RPEP2-201ENST00000432149 701 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 AL358232.1-201ENST00000448030 501 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 AC012671.1-201ENST00000451912 203 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
COL18A1P39060 FTH1P21-201ENST00000512179 511 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 AC027216.1-201ENST00000577726 685 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 AC079587.1-201ENST00000603846 277 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
COL18A1P39060 AC067931.1-201ENST00000624190 671 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.85□□□□□ -1.47
COL18A1P39060 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.85□□□□□ -1.47
COL18A1P39060 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 AC090220.1-201ENST00000593078 1699 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC5.85□□□□□ -1.47
COL18A1P39060 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.85□□□□□ -1.47
COL18A1P39060 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 RNU1-14P-201ENST00000362759 152 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 RNA5SP387-201ENST00000364226 106 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL18A1P39060 RNU6-761P-201ENST00000384148 107 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 SNORA74C-2-201ENST00000411179 201 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.85□□□□□ -1.47
COL18A1P39060 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.85□□□□□ -1.47
COL18A1P39060 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.85□□□□□ -1.47
COL18A1P39060 AL117339.2-201ENST00000430475 180 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 RN7SL132P-201ENST00000478131 296 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.85□□□□□ -1.47
COL18A1P39060 AC008013.2-202ENST00000637965 364 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL18A1P39060 MAPK10-349ENST00000641767 3661 ntBASIC5.85□□□□□ -1.47
COL18A1P39060 SCARNA15-201ENST00000607520 4325 ntBASIC5.84□□□□□ -1.47
COL18A1P39060 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms