Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC4.99□□□□□ -1.61
MSH3P20585 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.99□□□□□ -1.61
MSH3P20585 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.99□□□□□ -1.61
MSH3P20585 RN7SKP34-201ENST00000516142 244 ntBASIC4.99□□□□□ -1.61
MSH3P20585 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.99□□□□□ -1.61
MSH3P20585 MTND5P21-201ENST00000531961 522 ntBASIC4.99□□□□□ -1.61
MSH3P20585 AC008147.3-201ENST00000548666 354 ntBASIC4.99□□□□□ -1.61
MSH3P20585 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC4.99□□□□□ -1.61
MSH3P20585 AC044860.2-201ENST00000561005 179 ntBASIC4.99□□□□□ -1.61
MSH3P20585 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.99□□□□□ -1.61
MSH3P20585 MIR3936-201ENST00000584304 110 ntBASIC4.99□□□□□ -1.61
MSH3P20585 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.99□□□□□ -1.61
MSH3P20585 AC011458.1-201ENST00000604034 617 ntBASIC4.99□□□□□ -1.61
MSH3P20585 KATNBL1P5-201ENST00000605015 517 ntBASIC4.99□□□□□ -1.61
MSH3P20585 AC242628.1-201ENST00000606810 391 ntBASIC4.99□□□□□ -1.61
MSH3P20585 AC022306.3-201ENST00000619930 550 ntBASIC4.99□□□□□ -1.61
MSH3P20585 AC018445.2-201ENST00000622987 260 ntBASIC4.99□□□□□ -1.61
MSH3P20585 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.99□□□□□ -1.61
MSH3P20585 AC000374.1-201ENST00000434698 1745 ntBASIC4.99□□□□□ -1.61
MSH3P20585 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSH3P20585 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSH3P20585 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.99□□□□□ -1.61
MSH3P20585 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.99□□□□□ -1.61
MSH3P20585 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
MSH3P20585 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 SNORD115-48-201ENST00000364764 76 ntBASIC4.98□□□□□ -1.61
MSH3P20585 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
MSH3P20585 SNORA70.10-201ENST00000384515 134 ntBASIC4.98□□□□□ -1.61
MSH3P20585 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
MSH3P20585 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
MSH3P20585 CHMP1B2P-201ENST00000399581 597 ntBASIC4.98□□□□□ -1.61
MSH3P20585 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 SNORA77-201ENST00000408716 125 ntBASIC4.98□□□□□ -1.61
MSH3P20585 METTL5-204ENST00000409340 472 ntTSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.98□□□□□ -1.61
MSH3P20585 ZNF965P-201ENST00000432501 817 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC4.98□□□□□ -1.61
MSH3P20585 AL138787.1-202ENST00000437804 898 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 TXNP5-201ENST00000441043 315 ntBASIC4.98□□□□□ -1.61
MSH3P20585 RPL34P20-201ENST00000442771 351 ntBASIC4.98□□□□□ -1.61
MSH3P20585 OR7E125P-201ENST00000443450 846 ntBASIC4.98□□□□□ -1.61
MSH3P20585 IGHV5-78-201ENST00000450948 295 ntBASIC4.98□□□□□ -1.61
MSH3P20585 TPT1P1-201ENST00000458495 518 ntBASIC4.98□□□□□ -1.61
MSH3P20585 STRADBP1-201ENST00000478954 1281 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.98□□□□□ -1.61
MSH3P20585 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 AC093890.1-201ENST00000502554 540 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC016550.1-201ENST00000505348 785 ntBASIC4.98□□□□□ -1.61
MSH3P20585 FABP5P6-201ENST00000510588 409 ntBASIC4.98□□□□□ -1.61
MSH3P20585 HMGB1P47-201ENST00000511281 589 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC4.98□□□□□ -1.61
MSH3P20585 RFPL4AP5-201ENST00000514977 504 ntBASIC4.98□□□□□ -1.61
MSH3P20585 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.98□□□□□ -1.61
MSH3P20585 AP003102.1-201ENST00000525638 661 ntBASIC4.98□□□□□ -1.61
MSH3P20585 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 BNIP3P1-201ENST00000547295 580 ntBASIC4.98□□□□□ -1.61
MSH3P20585 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.98□□□□□ -1.61
MSH3P20585 SETP1-201ENST00000556014 845 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC106785.3-201ENST00000564064 847 ntBASIC4.98□□□□□ -1.61
MSH3P20585 EIF1P5-201ENST00000585002 234 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.98□□□□□ -1.61
MSH3P20585 AP002884.5-201ENST00000595053 1132 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC120053.1-201ENST00000607706 736 ntBASIC4.98□□□□□ -1.61
MSH3P20585 AC110792.4-201ENST00000609843 298 ntBASIC4.98□□□□□ -1.61
MSH3P20585 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 TMEM30CP-203ENST00000637814 1035 ntBASIC4.98□□□□□ -1.61
MSH3P20585 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.98□□□□□ -1.61
MSH3P20585 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.98□□□□□ -1.61
MSH3P20585 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
MSH3P20585 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSH3P20585 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSH3P20585 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSH3P20585 NEAT1-202ENST00000501122 22743 ntBASIC4.97□□□□□ -1.61
MSH3P20585 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.97□□□□□ -1.61
MSH3P20585 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSH3P20585 AL731566.1-201ENST00000620490 1937 ntBASIC4.97□□□□□ -1.61
MSH3P20585 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.97□□□□□ -1.61
MSH3P20585 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.97□□□□□ -1.61
MSH3P20585 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.97□□□□□ -1.61
MSH3P20585 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSH3P20585 OR13C3-201ENST00000374781 1108 ntBASIC4.97□□□□□ -1.61
MSH3P20585 U3.32-201ENST00000408116 212 ntBASIC4.97□□□□□ -1.61
MSH3P20585 SNORA79B-201ENST00000410557 148 ntBASIC4.97□□□□□ -1.61
MSH3P20585 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSH3P20585 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.97□□□□□ -1.61
MSH3P20585 AL137845.2-201ENST00000444292 988 ntBASIC4.97□□□□□ -1.61
MSH3P20585 SUMO2P1-206ENST00000445436 284 ntBASIC4.97□□□□□ -1.61
MSH3P20585 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.97□□□□□ -1.61
MSH3P20585 TCEA1P1-201ENST00000449716 880 ntBASIC4.97□□□□□ -1.61
MSH3P20585 RN7SL319P-201ENST00000480656 221 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms