Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC008549.2-201ENST00000333482 706 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC104297.1-201ENST00000393779 870 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 ARL4AP5-201ENST00000404372 599 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 U3.35-201ENST00000408405 208 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AL157884.3-201ENST00000448273 1184 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 COX6B1P2-201ENST00000489624 230 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC011005.3-201ENST00000491624 395 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 RNU2-30P-201ENST00000516209 141 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 RNU1-6P-201ENST00000516290 144 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 OR4V1P-201ENST00000525394 1140 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 FKBP1BP1-201ENST00000553366 325 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC105129.1-201ENST00000560250 297 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC098935.2-201ENST00000604222 466 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AC119674.1-220ENST00000641502 1048 ntBASIC4.83□□□□□ -1.64
LHX3Q9UBR4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.83□□□□□ -1.64
LHX3Q9UBR4 AL034370.1-201ENST00000397254 1590 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AP000473.2-201ENST00000602659 1537 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AL590240.1-201ENST00000334118 313 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 MTCYBP7-201ENST00000419540 1134 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 E2F6P2-201ENST00000420708 748 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AL356806.1-201ENST00000422524 916 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 EIF4HP2-201ENST00000424380 563 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 CKS1BP6-201ENST00000424932 240 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AL606490.8-201ENST00000441624 319 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 RHEBP2-201ENST00000450289 600 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC079168.2-201ENST00000453977 416 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 LARP7P4-201ENST00000481075 878 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC073358.1-201ENST00000505671 684 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 SNORA70.11-201ENST00000515987 138 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 SNORA70.13-201ENST00000516116 138 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 RNA5SP249-201ENST00000516127 99 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC109635.6-201ENST00000525487 1113 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AL110118.1-201ENST00000553543 400 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 MIR4270-201ENST00000581799 70 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 AC084036.1-201ENST00000609190 508 ntBASIC4.82□□□□□ -1.64
LHX3Q9UBR4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LHX3Q9UBR4 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 ZFRP1-201ENST00000457579 2970 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 AC125336.1-201ENST00000508893 2827 ntBASIC4.81□□□□□ -1.64
LHX3Q9UBR4 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LHX3Q9UBR4 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms