Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 RNU6-599P-201ENST00000459383 107 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 RNU6-1193P-201ENST00000459461 107 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 RPS26P39-201ENST00000469206 341 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC020779.1-201ENST00000478757 796 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 SYT14P1-201ENST00000481459 721 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 RPEP1-201ENST00000504507 658 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 RNU6-941P-201ENST00000516346 108 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 IGHV3-63-201ENST00000518422 341 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AP006245.2-201ENST00000522004 300 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 IGKV2-18-201ENST00000522607 343 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 MIR3936-201ENST00000584304 110 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 OR1AB1P-201ENST00000585564 761 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 MTATP6P2-201ENST00000603319 678 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC005034.4-201ENST00000603612 899 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC079880.2-201ENST00000603790 1213 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC005252.1-201ENST00000604518 1063 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC009597.2-201ENST00000604659 592 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC012557.1-201ENST00000607115 611 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL135786.2-201ENST00000608422 615 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AP001033.2-201ENST00000609701 1003 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 BX323046.1-201ENST00000610145 535 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC108359.1-201ENST00000616451 1211 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL445528.2-201ENST00000620582 470 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 RNU6-368P-201ENST00000620928 107 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC009269.6-201ENST00000621778 588 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 RNU6-538P-201ENST00000622329 107 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL049777.1-201ENST00000622740 518 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC068880.4-201ENST00000623082 495 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 CYP4F35P-202ENST00000636121 390 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 SCARNA15-201ENST00000607520 4325 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL022393.1-201ENST00000625142 1677 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC005332.5-201ENST00000591222 2919 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.46□□□□□ -1.69
NKX3-1Q99801 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.46□□□□□ -1.69
NKX3-1Q99801 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.69
NKX3-1Q99801 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.46□□□□□ -1.69
NKX3-1Q99801 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.69
NKX3-1Q99801 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.69
NKX3-1Q99801 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 RAD1P1-201ENST00000231383 813 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 MIR16-2-201ENST00000362117 81 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 RN7SKP162-201ENST00000363605 345 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 RNA5SP335-201ENST00000363817 110 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 RNU1-146P-201ENST00000364015 165 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC002524.1-201ENST00000411687 547 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 SETP15-201ENST00000412724 337 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 Z68694.1-201ENST00000413929 841 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC104333.2-201ENST00000422630 192 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 VN1R42P-201ENST00000424651 344 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 GAPDHP58-201ENST00000438477 1006 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC012512.1-201ENST00000446594 718 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 GAPDHP25-201ENST00000447061 1001 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 RPL32P14-201ENST00000463196 378 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC107398.1-201ENST00000486904 505 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 NRBF2P4-201ENST00000520874 850 ntBASIC4.46□□□□□ -1.7
NKX3-1Q99801 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NKX3-1Q99801 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms